(9 nodes) Bromodomain-like superfamily network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_08413	Uncharacterized protein. (1421 aa)
	FNYG_15376	Uncharacterized protein. (306 aa)
	FNYG_13464	Uncharacterized protein. (682 aa)
	FNYG_11027	Bromo domain-containing protein. (379 aa)
	FNYG_00432	Uncharacterized protein. (912 aa)
	FNYG_02103	Bromo domain-containing protein. (1143 aa)
	FNYG_03558	Uncharacterized protein. (1026 aa)
	FNYG_03811	Uncharacterized protein. (599 aa)
	FNYG_06729	Uncharacterized protein. (396 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00432	FNYG_03558	A0A2K0WVB1	A0A2K0WLT3	Uncharacterized protein.	Uncharacterized protein.	0.452
FNYG_00432	FNYG_08413	A0A2K0WVB1	A0A2K0W863	Uncharacterized protein.	Uncharacterized protein.	0.593
FNYG_02103	FNYG_06729	A0A2K0WQD7	A0A2K0WCL4	Bromo domain-containing protein.	Uncharacterized protein.	0.914
FNYG_02103	FNYG_15376	A0A2K0WQD7	A0A2K0UE31	Bromo domain-containing protein.	Uncharacterized protein.	0.914
FNYG_03558	FNYG_00432	A0A2K0WLT3	A0A2K0WVB1	Uncharacterized protein.	Uncharacterized protein.	0.452
FNYG_03558	FNYG_11027	A0A2K0WLT3	A0A2K0W022	Uncharacterized protein.	Bromo domain-containing protein.	0.450
FNYG_03811	FNYG_08413	A0A2K0WJX4	A0A2K0W863	Uncharacterized protein.	Uncharacterized protein.	0.984
FNYG_06729	FNYG_02103	A0A2K0WCL4	A0A2K0WQD7	Uncharacterized protein.	Bromo domain-containing protein.	0.914
FNYG_06729	FNYG_08413	A0A2K0WCL4	A0A2K0W863	Uncharacterized protein.	Uncharacterized protein.	0.633
FNYG_08413	FNYG_00432	A0A2K0W863	A0A2K0WVB1	Uncharacterized protein.	Uncharacterized protein.	0.593
FNYG_08413	FNYG_03811	A0A2K0W863	A0A2K0WJX4	Uncharacterized protein.	Uncharacterized protein.	0.984
FNYG_08413	FNYG_06729	A0A2K0W863	A0A2K0WCL4	Uncharacterized protein.	Uncharacterized protein.	0.633
FNYG_08413	FNYG_11027	A0A2K0W863	A0A2K0W022	Uncharacterized protein.	Bromo domain-containing protein.	0.593
FNYG_08413	FNYG_13464	A0A2K0W863	A0A2K0V9M3	Uncharacterized protein.	Uncharacterized protein.	0.984
FNYG_08413	FNYG_15376	A0A2K0W863	A0A2K0UE31	Uncharacterized protein.	Uncharacterized protein.	0.633
FNYG_11027	FNYG_03558	A0A2K0W022	A0A2K0WLT3	Bromo domain-containing protein.	Uncharacterized protein.	0.450
FNYG_11027	FNYG_08413	A0A2K0W022	A0A2K0W863	Bromo domain-containing protein.	Uncharacterized protein.	0.593
FNYG_13464	FNYG_08413	A0A2K0V9M3	A0A2K0W863	Uncharacterized protein.	Uncharacterized protein.	0.984
FNYG_15376	FNYG_02103	A0A2K0UE31	A0A2K0WQD7	Uncharacterized protein.	Bromo domain-containing protein.	0.914
FNYG_15376	FNYG_08413	A0A2K0UE31	A0A2K0W863	Uncharacterized protein.	Uncharacterized protein.	0.633