STRINGSTRING
FNYG_13376 FNYG_13376 FNYG_13449 FNYG_13449 FNYG_03297 FNYG_03297 FNYG_08541 FNYG_08541 FNYG_08549 FNYG_08549 FNYG_07641 FNYG_07641 LSM1 LSM1 FNYG_01728 FNYG_01728 FNYG_03636 FNYG_03636 FNYG_05123 FNYG_05123 FNYG_09379 FNYG_09379 FNYG_09381 FNYG_09381 LSM8 LSM8 FNYG_09270 FNYG_09270 LSM4 LSM4 LSM5 LSM5 FNYG_12511 FNYG_12511
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
FNYG_13376Sm domain-containing protein. (207 aa)
FNYG_13449Small nuclear ribonucleoprotein G. (91 aa)
FNYG_03297Small nuclear ribonucleoprotein Sm D2. (118 aa)
FNYG_08541Sm domain-containing protein. (79 aa)
FNYG_08549Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
FNYG_07641Sm domain-containing protein. (89 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (169 aa)
FNYG_01728Small nuclear ribonucleoprotein Sm D3. (115 aa)
FNYG_03636Sm domain-containing protein. (106 aa)
FNYG_05123Uncharacterized protein. (554 aa)
FNYG_09379U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (120 aa)
FNYG_09381Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (123 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
FNYG_09270Sm domain-containing protein. (90 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (109 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
FNYG_12511Sm domain-containing protein. (133 aa)
Your Current Organism:
Fusarium nygamai
NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448
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