(35 nodes) mRNA Capping network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPB1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1744 aa)
	FNYG_12622	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1047 aa)
	FNYG_12050	RNA_pol_L_2 domain-containing protein. (143 aa)
	FNYG_11912	Uncharacterized protein. (72 aa)
	FNYG_11724	Uncharacterized protein. (172 aa)
	FNYG_11065	Uncharacterized protein. (236 aa)
	FNYG_10049	Uncharacterized protein. (763 aa)
	FNYG_09490	Uncharacterized protein. (71 aa)
	FNYG_09316	Uncharacterized protein. (416 aa)
	FNYG_09119	Uncharacterized protein. (697 aa)
	FNYG_08263	Uncharacterized protein. (154 aa)
	FNYG_08381	Uncharacterized protein. (825 aa)
	FNYG_07569	RPOLD domain-containing protein. (340 aa)
	FNYG_06462	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (389 aa)
	FNYG_05840	mRNA cap guanine-N7 methyltransferase. (477 aa)
	FNYG_05134	Uncharacterized protein. (356 aa)
	FNYG_04913	Nuclear cap-binding protein subunit 2. (173 aa)
	FNYG_04589	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (496 aa)
	FNYG_04460	RPOL9 domain-containing protein. (186 aa)
	FNYG_03518	Uncharacterized protein. (797 aa)
	FNYG_01389	Cyclin_C_2 domain-containing protein. (348 aa)
	FNYG_01238	Methyltransf_25 domain-containing protein. (253 aa)
	FNYG_01096	RING-type domain-containing protein. (363 aa)
	FNYG_00050	Helicase ATP-binding domain-containing protein. (748 aa)
	FNYG_00065	BSD domain-containing protein. (645 aa)
	FNYG_03237	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (148 aa)
	FNYG_03226	Uncharacterized protein. (665 aa)
	FNYG_03103	TYR_PHOSPHATASE_2 domain-containing protein. (634 aa)
	FNYG_03626	Uncharacterized protein. (80 aa)
	FNYG_14793	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (413 aa)
	RPB2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1270 aa)
	FNYG_13488	Uncharacterized protein. (922 aa)
	FNYG_13418	RPOL4c domain-containing protein. (158 aa)
	FNYG_13410	Uncharacterized protein. (373 aa)
	FNYG_13343	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (468 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00050	FNYG_00065	A0A2K0WWD5	A0A2K0WWF4	Helicase ATP-binding domain-containing protein.	BSD domain-containing protein.	0.997
FNYG_00050	FNYG_01096	A0A2K0WWD5	A0A2K0WUU1	Helicase ATP-binding domain-containing protein.	RING-type domain-containing protein.	0.997
FNYG_00050	FNYG_01389	A0A2K0WWD5	A0A2K0WSD1	Helicase ATP-binding domain-containing protein.	Cyclin_C_2 domain-containing protein.	0.992
FNYG_00050	FNYG_03226	A0A2K0WWD5	A0A2K0WN15	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.979
FNYG_00050	FNYG_03237	A0A2K0WWD5	A0A2K0WN32	Helicase ATP-binding domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.975
FNYG_00050	FNYG_03626	A0A2K0WWD5	A0A2K0WM13	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.978
FNYG_00050	FNYG_04460	A0A2K0WWD5	A0A2K0WJ16	Helicase ATP-binding domain-containing protein.	RPOL9 domain-containing protein.	0.976
FNYG_00050	FNYG_04589	A0A2K0WWD5	A0A2K0WIC4	Helicase ATP-binding domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.996
FNYG_00050	FNYG_05134	A0A2K0WWD5	A0A2K0WH82	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.997
FNYG_00050	FNYG_07569	A0A2K0WWD5	A0A2K0WA69	Helicase ATP-binding domain-containing protein.	RPOLD domain-containing protein.	0.981
FNYG_00050	FNYG_08263	A0A2K0WWD5	A0A2K0W7Q7	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.977
FNYG_00050	FNYG_08381	A0A2K0WWD5	A0A2K0W833	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.979
FNYG_00050	FNYG_09119	A0A2K0WWD5	A0A2K0W5S9	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.962
FNYG_00050	FNYG_09316	A0A2K0WWD5	A0A2K0W578	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.967
FNYG_00050	FNYG_09490	A0A2K0WWD5	A0A2K0W4I7	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.981
FNYG_00050	FNYG_10049	A0A2K0WWD5	A0A2K0W2Y6	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.979
FNYG_00050	FNYG_11065	A0A2K0WWD5	A0A2K0W070	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.978
FNYG_00050	FNYG_11724	A0A2K0WWD5	A0A2K0VY33	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.979
FNYG_00050	FNYG_11912	A0A2K0WWD5	A0A2K0VXN5	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.978
FNYG_00050	FNYG_12050	A0A2K0WWD5	A0A2K0VX56	Helicase ATP-binding domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.973