(147 nodes) rRNA processing network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_04173	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (371 aa)
	FNYG_04123	Uncharacterized protein. (884 aa)
	FNYG_04526	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
	FNYG_04428	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (543 aa)
	FNYG_04550	S4 RNA-binding domain-containing protein. (191 aa)
	FNYG_04971	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (260 aa)
	FNYG_04908	Ribosomal_S10 domain-containing protein. (116 aa)
	FNYG_04892	Uncharacterized protein. (288 aa)
	FNYG_04850	Sas10 domain-containing protein. (616 aa)
	FNYG_04760	Uncharacterized protein. (147 aa)
	FNYG_05409	RNase_PH domain-containing protein. (338 aa)
	FNYG_05378	Nop domain-containing protein. (592 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (292 aa)
	FNYG_05332	Nop domain-containing protein. (511 aa)
	FNYG_05330	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (117 aa)
	FNYG_05917	Uncharacterized protein. (313 aa)
	FNYG_05863	SpoU_sub_bind domain-containing protein. (690 aa)
	FNYG_06302	S4 RNA-binding domain-containing protein. (183 aa)
	FNYG_06048	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (135 aa)
	cnxG	Molybdopterin synthase sulfur carrier subunit; Acts as a sulfur carrier required for molybdopterin biosynthesis. Component of the molybdopterin synthase complex that catalyzes the conversion of precursor Z into molybdopterin by mediating the incorporation of 2 sulfur atoms into precursor Z to generate a dithiolene group. In the complex, serves as sulfur donor by being thiocarboxylated (-COSH) at its C-terminus by UBA4. After interaction with MOCS2B, the sulfur is then transferred to precursor Z to form molybdopterin. (96 aa)
	FNYG_06401	Uncharacterized protein. (68 aa)
	FNYG_06474	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (188 aa)
	FNYG_06439	Ribosomal_L2_C domain-containing protein. (288 aa)
	FNYG_06698	WD_REPEATS_REGION domain-containing protein. (428 aa)
	FNYG_06704	WD_REPEATS_REGION domain-containing protein. (870 aa)
	FNYG_07035	WD_REPEATS_REGION domain-containing protein. (528 aa)
	FNYG_07018	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (719 aa)
	FNYG_06996	ECR1_N domain-containing protein. (331 aa)
	FNYG_06964	Brix domain-containing protein. (298 aa)
	FNYG_07079	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (446 aa)
	FNYG_07626	Uncharacterized protein. (166 aa)
	FNYG_07570	WD_REPEATS_REGION domain-containing protein. (445 aa)
	FNYG_07531	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (257 aa)
	FNYG_07513	Uncharacterized protein. (297 aa)
	FNYG_07778	Methyltransf_11 domain-containing protein. (204 aa)
	FNYG_08399	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (154 aa)
	FNYG_01168	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (264 aa)
	FNYG_00366	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (136 aa)
	FNYG_00431	Utp12 domain-containing protein. (389 aa)
	FNYG_00453	Bms1-type G domain-containing protein. (816 aa)
	FNYG_00452	WD_REPEATS_REGION domain-containing protein. (552 aa)
	FNYG_00331	Uncharacterized protein. (92 aa)
	FNYG_00058	ULP_PROTEASE domain-containing protein. (1031 aa)
	FNYG_01006	RNase_PH domain-containing protein. (268 aa)
	FNYG_00842	Uncharacterized protein. (399 aa)
	FNYG_01387	Uncharacterized protein. (436 aa)
	FNYG_01726	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (342 aa)
	FNYG_01905	Uncharacterized protein. (405 aa)
	FNYG_01880	Uncharacterized protein. (319 aa)
	FNYG_01813	Uncharacterized protein. (546 aa)
	FNYG_02127	S10_plectin domain-containing protein. (165 aa)
	FNYG_02053	U3 small nucleolar RNA-associated protein 22. (1105 aa)
	FNYG_08398	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	FNYG_08404	Uncharacterized protein; Belongs to the DEAD box helicase family. (539 aa)
	FNYG_08363	BP28CT domain-containing protein. (1800 aa)
	FNYG_08207	Uncharacterized protein. (839 aa)
	FNYG_08236	RIX1 domain-containing protein. (761 aa)
	FNYG_08454	CLP1_P domain-containing protein. (516 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (764 aa)
	FNYG_08593	Uncharacterized protein. (236 aa)
	FNYG_08843	Uncharacterized protein. (1096 aa)
	FNYG_08963	CP-type G domain-containing protein. (544 aa)
	FNYG_09366	CBF domain-containing protein. (549 aa)
	FNYG_09339	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (152 aa)
	FNYG_09243	WD_REPEATS_REGION domain-containing protein. (581 aa)
	FNYG_09142	DRIM domain-containing protein. (2642 aa)
	FNYG_09534	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (709 aa)
	FNYG_09513	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (124 aa)
	FNYG_09413	Uncharacterized protein; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (302 aa)
	FNYG_09724	WD_REPEATS_REGION domain-containing protein. (582 aa)
	FNYG_09723	ULP_PROTEASE domain-containing protein. (1070 aa)
	FNYG_09710	WD_REPEATS_REGION domain-containing protein. (908 aa)
	FNYG_09761	RNase_PH domain-containing protein. (333 aa)
	FNYG_09784	Ipi1_N domain-containing protein. (342 aa)
	FNYG_10098	Uncharacterized protein. (233 aa)
	FNYG_10282	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (116 aa)
	FNYG_10265	Uncharacterized protein. (422 aa)
	FNYG_10278	Uncharacterized protein. (212 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (819 aa)
	FNYG_10414	Uncharacterized protein. (485 aa)
	FNYG_10386	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (320 aa)
	FNYG_10289	Uncharacterized protein. (1042 aa)
	FNYG_10730	S4 RNA-binding domain-containing protein. (528 aa)
	FNYG_10905	HRDC domain-containing protein. (807 aa)
	FNYG_11109	Bms1-type G domain-containing protein. (1145 aa)
	FNYG_11096	RIO domain-containing protein. (409 aa)
	FNYG_10976	Uncharacterized protein. (362 aa)
	FNYG_11186	Uncharacterized protein. (150 aa)
	FNYG_11185	Uncharacterized protein. (372 aa)
	FNYG_11157	Uncharacterized protein. (1798 aa)
	FNYG_11451	Uncharacterized protein. (185 aa)
	FNYG_11540	Ribosomal_L28e domain-containing protein. (159 aa)
	FNYG_11575	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	FNYG_11548	Uncharacterized protein. (736 aa)
	FNYG_11653	Uncharacterized protein. (231 aa)
	FNYG_11803	Ribosomal_L18e/L15P domain-containing protein. (210 aa)
	FNYG_11802	FtsJ domain-containing protein. (253 aa)
	FNYG_11921	Uncharacterized protein; Belongs to the DEAD box helicase family. (485 aa)
	FNYG_11910	Uncharacterized protein. (239 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (475 aa)
	FNYG_12579	WD_REPEATS_REGION domain-containing protein. (894 aa)
	FNYG_12724	Uncharacterized protein. (1209 aa)
	FNYG_12692	Uncharacterized protein. (396 aa)
	FNYG_13138	Uncharacterized protein. (82 aa)
	FNYG_13163	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (988 aa)
	FNYG_13182	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	FNYG_13327	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (153 aa)
	FNYG_13328	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (213 aa)
	FNYG_13394	Uncharacterized protein. (404 aa)
	FNYG_13384	RNase_PH domain-containing protein. (250 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (657 aa)
	FNYG_13541	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (173 aa)
	FNYG_13542	Uncharacterized protein. (306 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1066 aa)
	FNYG_14064	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (156 aa)
	FNYG_13923	Uncharacterized protein. (280 aa)
	FNYG_14314	KH domain-containing protein. (257 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	FNYG_14979	Uncharacterized protein. (317 aa)
	FNYG_15428	Uncharacterized protein. (628 aa)
	TSR3	Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (397 aa)
	FNYG_01982	Uncharacterized protein. (259 aa)
	FNYG_02416	Uncharacterized protein. (101 aa)
	FNYG_02404	RTC domain-containing protein. (405 aa)
	FNYG_03241	RNase_PH domain-containing protein. (283 aa)
	FNYG_03215	Exonuclease domain-containing protein. (319 aa)
	FNYG_03087	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (142 aa)
	FNYG_03101	Uncharacterized protein. (116 aa)
	FNYG_03627	WD_REPEATS_REGION domain-containing protein. (962 aa)
	FNYG_03606	Uncharacterized protein. (693 aa)
	FNYG_03542	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (239 aa)
	FNYG_03547	Uncharacterized protein. (367 aa)
	FNYG_03546	Uncharacterized protein. (190 aa)
	FNYG_03545	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (206 aa)
	FNYG_03514	Uncharacterized protein. (208 aa)
	FNYG_03499	PINc domain-containing protein. (198 aa)
	FNYG_03488	Uncharacterized protein. (408 aa)
	FNYG_03476	Uncharacterized protein. (56 aa)
	FNYG_03442	Uncharacterized protein. (324 aa)
	FNYG_03441	Uncharacterized protein. (306 aa)
	FNYG_03336	WD_REPEATS_REGION domain-containing protein. (960 aa)
	FNYG_03328	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	FNYG_03258	Uncharacterized protein. (901 aa)
	FNYG_04277	Methyltransf_25 domain-containing protein. (215 aa)
	FNYG_04257	Uncharacterized protein. (245 aa)
	FNYG_04192	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (261 aa)
	FNYG_04193	Uncharacterized protein. (582 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	FNYG_00058	A0A2K0W793	A0A2K0WWF0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	ULP_PROTEASE domain-containing protein.	0.719
ERB1	FNYG_00331	A0A2K0W793	A0A2K0WVN0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.792
ERB1	FNYG_00431	A0A2K0W793	A0A2K0WVA1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Utp12 domain-containing protein.	0.824
ERB1	FNYG_00452	A0A2K0W793	A0A2K0WVC7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.924
ERB1	FNYG_00453	A0A2K0W793	A0A2K0WVB6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Bms1-type G domain-containing protein.	0.900
ERB1	FNYG_01168	A0A2K0W793	A0A2K0WV00	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.468
ERB1	FNYG_01726	A0A2K0W793	A0A2K0WRJ4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.794
ERB1	FNYG_01813	A0A2K0W793	A0A2K0WR22	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.847
ERB1	FNYG_01880	A0A2K0W793	A0A2K0WR90	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.944
ERB1	FNYG_01905	A0A2K0W793	A0A2K0WRA8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.505
ERB1	FNYG_01982	A0A2K0W793	A0A2K0WQ08	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.498
ERB1	FNYG_02053	A0A2K0W793	A0A2K0WQ92	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein 22.	0.866
ERB1	FNYG_02404	A0A2K0W793	A0A2K0WPP9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RTC domain-containing protein.	0.623
ERB1	FNYG_03087	A0A2K0W793	A0A2K0WMP8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.702
ERB1	FNYG_03101	A0A2K0W793	A0A2K0WMN4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.950
ERB1	FNYG_03215	A0A2K0W793	A0A2K0WN04	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Exonuclease domain-containing protein.	0.631
ERB1	FNYG_03258	A0A2K0W793	A0A2K0WKY5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.871
ERB1	FNYG_03336	A0A2K0W793	A0A2K0WL64	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.939
ERB1	FNYG_03441	A0A2K0W793	A0A2K0WLF8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.806
ERB1	FNYG_03442	A0A2K0W793	A0A2K0WLH7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.799