(28 nodes) RNA Polymerase III Transcription Initiation network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_15188	HTH myb-type domain-containing protein. (176 aa)
	FNYG_14779	HTH myb-type domain-containing protein. (176 aa)
	FNYG_12868	Uncharacterized protein. (753 aa)
	FNYG_11912	Uncharacterized protein. (72 aa)
	FNYG_11810	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1450 aa)
	FNYG_10975	Uncharacterized protein. (406 aa)
	FNYG_11065	Uncharacterized protein. (236 aa)
	FNYG_10258	C2H2-type domain-containing protein. (1931 aa)
	FNYG_09732	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (110 aa)
	FNYG_09479	ENDO3c domain-containing protein. (361 aa)
	FNYG_09374	RPOLD domain-containing protein. (381 aa)
	FNYG_08634	Uncharacterized protein. (603 aa)
	FNYG_08431	Uncharacterized protein. (293 aa)
	FNYG_08263	Uncharacterized protein. (154 aa)
	FNYG_06799	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (383 aa)
	FNYG_00320	SANT domain-containing protein. (577 aa)
	FNYG_02660	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1427 aa)
	FNYG_03237	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (148 aa)
	FNYG_03120	Uncharacterized protein. (369 aa)
	FNYG_03119	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (265 aa)
	FNYG_02988	Uncharacterized protein. (706 aa)
	FNYG_03684	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1157 aa)
	FNYG_03626	Uncharacterized protein. (80 aa)
	FNYG_03531	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (633 aa)
	FNYG_05037	Uncharacterized protein. (923 aa)
	FNYG_04798	Uncharacterized protein. (193 aa)
	FNYG_05112	RPOL4c domain-containing protein. (150 aa)
	FNYG_05820	Uncharacterized protein. (254 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00320	FNYG_02660	A0A2K0WVM7	A0A2K0WNW8	SANT domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.970
FNYG_00320	FNYG_02988	A0A2K0WVM7	A0A2K0WMC1	SANT domain-containing protein.	Uncharacterized protein.	0.783
FNYG_00320	FNYG_03119	A0A2K0WVM7	A0A2K0WMQ0	SANT domain-containing protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.940
FNYG_00320	FNYG_03120	A0A2K0WVM7	A0A2K0WMQ7	SANT domain-containing protein.	Uncharacterized protein.	0.891
FNYG_00320	FNYG_03237	A0A2K0WVM7	A0A2K0WN32	SANT domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.955
FNYG_00320	FNYG_03531	A0A2K0WVM7	A0A2K0WLQ4	SANT domain-containing protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.980
FNYG_00320	FNYG_03626	A0A2K0WVM7	A0A2K0WM13	SANT domain-containing protein.	Uncharacterized protein.	0.892
FNYG_00320	FNYG_03684	A0A2K0WVM7	A0A2K0WM55	SANT domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.973
FNYG_00320	FNYG_04798	A0A2K0WVM7	A0A2K0WHL7	SANT domain-containing protein.	Uncharacterized protein.	0.975
FNYG_00320	FNYG_05037	A0A2K0WVM7	A0A2K0WIB1	SANT domain-containing protein.	Uncharacterized protein.	0.966
FNYG_00320	FNYG_05112	A0A2K0WVM7	A0A2K0WH35	SANT domain-containing protein.	RPOL4c domain-containing protein.	0.979
FNYG_00320	FNYG_05820	A0A2K0WVM7	A0A2K0WEZ8	SANT domain-containing protein.	Uncharacterized protein.	0.996
FNYG_00320	FNYG_06799	A0A2K0WVM7	A0A2K0WCT4	SANT domain-containing protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.983
FNYG_00320	FNYG_08263	A0A2K0WVM7	A0A2K0W7Q7	SANT domain-containing protein.	Uncharacterized protein.	0.954
FNYG_00320	FNYG_08431	A0A2K0WVM7	A0A2K0W7F9	SANT domain-containing protein.	Uncharacterized protein.	0.742
FNYG_00320	FNYG_08634	A0A2K0WVM7	A0A2K0W6K5	SANT domain-containing protein.	Uncharacterized protein.	0.876
FNYG_00320	FNYG_09374	A0A2K0WVM7	A0A2K0W5D9	SANT domain-containing protein.	RPOLD domain-containing protein.	0.965
FNYG_00320	FNYG_09732	A0A2K0WVM7	A0A2K0W3J8	SANT domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.907
FNYG_00320	FNYG_10258	A0A2K0WVM7	A0A2K0W273	SANT domain-containing protein.	C2H2-type domain-containing protein.	0.912
FNYG_00320	FNYG_10975	A0A2K0WVM7	A0A2K0VZY3	SANT domain-containing protein.	Uncharacterized protein.	0.983