(7 nodes) Snf7 network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_06074	Uncharacterized protein. (212 aa)
	FNYG_05405	Uncharacterized protein. (201 aa)
	FNYG_05104	Uncharacterized protein. (228 aa)
	FNYG_03063	Uncharacterized protein. (227 aa)
	FNYG_03221	Uncharacterized protein. (456 aa)
	FNYG_09477	Uncharacterized protein. (223 aa)
	FNYG_07684	Uncharacterized protein. (206 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_03063	FNYG_03221	A0A2K0WMK1	A0A2K0WN08	Uncharacterized protein.	Uncharacterized protein.	0.923
FNYG_03063	FNYG_05104	A0A2K0WMK1	A0A2K0WH48	Uncharacterized protein.	Uncharacterized protein.	0.996
FNYG_03063	FNYG_05405	A0A2K0WMK1	A0A2K0WGG6	Uncharacterized protein.	Uncharacterized protein.	0.986
FNYG_03063	FNYG_06074	A0A2K0WMK1	A0A2K0WDX6	Uncharacterized protein.	Uncharacterized protein.	0.991
FNYG_03063	FNYG_07684	A0A2K0WMK1	A0A2K0W944	Uncharacterized protein.	Uncharacterized protein.	0.996
FNYG_03063	FNYG_09477	A0A2K0WMK1	A0A2K0W4H4	Uncharacterized protein.	Uncharacterized protein.	0.994
FNYG_03221	FNYG_03063	A0A2K0WN08	A0A2K0WMK1	Uncharacterized protein.	Uncharacterized protein.	0.923
FNYG_03221	FNYG_05104	A0A2K0WN08	A0A2K0WH48	Uncharacterized protein.	Uncharacterized protein.	0.941
FNYG_03221	FNYG_05405	A0A2K0WN08	A0A2K0WGG6	Uncharacterized protein.	Uncharacterized protein.	0.925
FNYG_03221	FNYG_06074	A0A2K0WN08	A0A2K0WDX6	Uncharacterized protein.	Uncharacterized protein.	0.896
FNYG_03221	FNYG_07684	A0A2K0WN08	A0A2K0W944	Uncharacterized protein.	Uncharacterized protein.	0.902
FNYG_03221	FNYG_09477	A0A2K0WN08	A0A2K0W4H4	Uncharacterized protein.	Uncharacterized protein.	0.948
FNYG_05104	FNYG_03063	A0A2K0WH48	A0A2K0WMK1	Uncharacterized protein.	Uncharacterized protein.	0.996
FNYG_05104	FNYG_03221	A0A2K0WH48	A0A2K0WN08	Uncharacterized protein.	Uncharacterized protein.	0.941
FNYG_05104	FNYG_05405	A0A2K0WH48	A0A2K0WGG6	Uncharacterized protein.	Uncharacterized protein.	0.981
FNYG_05104	FNYG_06074	A0A2K0WH48	A0A2K0WDX6	Uncharacterized protein.	Uncharacterized protein.	0.978
FNYG_05104	FNYG_07684	A0A2K0WH48	A0A2K0W944	Uncharacterized protein.	Uncharacterized protein.	0.990
FNYG_05104	FNYG_09477	A0A2K0WH48	A0A2K0W4H4	Uncharacterized protein.	Uncharacterized protein.	0.996
FNYG_05405	FNYG_03063	A0A2K0WGG6	A0A2K0WMK1	Uncharacterized protein.	Uncharacterized protein.	0.986
FNYG_05405	FNYG_03221	A0A2K0WGG6	A0A2K0WN08	Uncharacterized protein.	Uncharacterized protein.	0.925