(79 nodes) Nucleotide excision repair network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_14590	Amino_oxidase domain-containing protein. (501 aa)
	FNYG_14723	RING-type domain-containing protein. (115 aa)
	FNYG_14752	Reverse transcriptase domain-containing protein. (770 aa)
	FNYG_14769	Uncharacterized protein. (118 aa)
	FNYG_14793	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (413 aa)
	FNYG_14950	Integrase catalytic domain-containing protein. (678 aa)
	FNYG_15282	Integrase catalytic domain-containing protein. (1157 aa)
	FNYG_15275	Retrotrans_gag domain-containing protein. (242 aa)
	FNYG_15277	Uncharacterized protein. (224 aa)
	FNYG_15392	CPSF_A domain-containing protein. (1160 aa)
	FNYG_15525	Uncharacterized protein. (1322 aa)
	FNYG_15656	Uncharacterized protein. (271 aa)
	FNYG_15807	Reverse transcriptase Ty1/copia-type domain-containing protein. (432 aa)
	FNYG_15824	Integrase catalytic domain-containing protein. (553 aa)
	FNYG_15825	Uncharacterized protein. (413 aa)
	FNYG_00065	BSD domain-containing protein. (645 aa)
	FNYG_00050	Helicase ATP-binding domain-containing protein. (748 aa)
	FNYG_00321	Uncharacterized protein. (389 aa)
	FNYG_01096	RING-type domain-containing protein. (363 aa)
	FNYG_00870	Uncharacterized protein. (386 aa)
	FNYG_00848	Zds_C domain-containing protein. (897 aa)
	FNYG_01389	Cyclin_C_2 domain-containing protein. (348 aa)
	FNYG_01530	Uncharacterized protein. (1192 aa)
	FNYG_01531	CCHC-type domain-containing protein. (456 aa)
	FNYG_01705	Uncharacterized protein. (212 aa)
	FNYG_02078	DNA ligase. (880 aa)
	FNYG_03219	Uncharacterized protein. (410 aa)
	FNYG_03637	Uncharacterized protein. (1232 aa)
	FNYG_03580	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (167 aa)
	FNYG_03498	AAA domain-containing protein. (354 aa)
	FNYG_03469	DNA polymerase. (1104 aa)
	FNYG_03457	Uncharacterized protein. (503 aa)
	FNYG_03407	HMG box domain-containing protein. (549 aa)
	FNYG_03792	Uncharacterized protein. (1273 aa)
	FNYG_04245	ERCC4 domain-containing protein. (966 aa)
	FNYG_04589	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (496 aa)
	FNYG_04953	DNA ligase. (869 aa)
	FNYG_04881	CULLIN_2 domain-containing protein; Belongs to the cullin family. (795 aa)
	FNYG_05134	Uncharacterized protein. (356 aa)
	FNYG_05798	Uncharacterized protein. (996 aa)
	FNYG_06304	Uncharacterized protein. (1029 aa)
	FNYG_06150	Uncharacterized protein. (303 aa)
	FNYG_07051	WD_REPEATS_REGION domain-containing protein. (480 aa)
	FNYG_07195	Uncharacterized protein. (270 aa)
	FNYG_07194	Uncharacterized protein. (107 aa)
	FNYG_08381	Uncharacterized protein. (825 aa)
	FNYG_08312	Uncharacterized protein. (148 aa)
	FNYG_08441	Replication factor C subunit 1. (1047 aa)
	FNYG_08511	Helicase ATP-binding domain-containing protein. (864 aa)
	FNYG_08501	WD_REPEATS_REGION domain-containing protein. (511 aa)
	FNYG_08443	AAA domain-containing protein. (352 aa)
	FNYG_08537	AAA domain-containing protein. (1158 aa)
	FNYG_08829	XPA_C domain-containing protein. (382 aa)
	FNYG_08966	CBFD_NFYB_HMF domain-containing protein. (298 aa)
	FNYG_09024	Vezatin domain-containing protein. (617 aa)
	FNYG_09023	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)
	FNYG_09490	Uncharacterized protein. (71 aa)
	FNYG_09448	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (608 aa)
	FNYG_09411	Uncharacterized protein. (521 aa)
	FNYG_09818	Uncharacterized protein. (824 aa)
	FNYG_10049	Uncharacterized protein. (763 aa)
	FNYG_10247	Uncharacterized protein. (265 aa)
	FNYG_10754	CBFD_NFYB_HMF domain-containing protein. (177 aa)
	FNYG_10484	Uncharacterized protein. (147 aa)
	FNYG_11034	Uncharacterized protein. (269 aa)
	FNYG_10941	Uncharacterized protein. (1049 aa)
	FNYG_11574	Uncharacterized protein. (1160 aa)
	FNYG_11711	AAA domain-containing protein. (382 aa)
	FNYG_11702	HMG box domain-containing protein. (310 aa)
	FNYG_11767	DNA_pol_E_B domain-containing protein. (776 aa)
	FNYG_12686	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2211 aa)
	FNYG_13348	Amino_oxidase domain-containing protein. (519 aa)
	FNYG_13320	AAA domain-containing protein. (392 aa)
	FNYG_13343	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (468 aa)
	FNYG_13315	Uncharacterized protein. (202 aa)
	FNYG_13914	Reverse transcriptase domain-containing protein. (751 aa)
	FNYG_13915	CCHC-type domain-containing protein. (857 aa)
	FNYG_13911	Peptidase_M14 domain-containing protein. (91 aa)
	FNYG_14052	Uncharacterized protein. (230 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00050	FNYG_00065	A0A2K0WWD5	A0A2K0WWF4	Helicase ATP-binding domain-containing protein.	BSD domain-containing protein.	0.997
FNYG_00050	FNYG_00321	A0A2K0WWD5	A0A2K0WVL9	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.848
FNYG_00050	FNYG_00870	A0A2K0WWD5	A0A2K0WU90	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.832
FNYG_00050	FNYG_01096	A0A2K0WWD5	A0A2K0WUU1	Helicase ATP-binding domain-containing protein.	RING-type domain-containing protein.	0.997
FNYG_00050	FNYG_01389	A0A2K0WWD5	A0A2K0WSD1	Helicase ATP-binding domain-containing protein.	Cyclin_C_2 domain-containing protein.	0.992
FNYG_00050	FNYG_02078	A0A2K0WWD5	A0A2K0WQ93	Helicase ATP-binding domain-containing protein.	DNA ligase.	0.797
FNYG_00050	FNYG_03407	A0A2K0WWD5	A0A2K0WLD4	Helicase ATP-binding domain-containing protein.	HMG box domain-containing protein.	0.823
FNYG_00050	FNYG_03457	A0A2K0WWD5	A0A2K0WLI3	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.693
FNYG_00050	FNYG_03469	A0A2K0WWD5	A0A2K0WLJ1	Helicase ATP-binding domain-containing protein.	DNA polymerase.	0.846
FNYG_00050	FNYG_03498	A0A2K0WWD5	A0A2K0WLM5	Helicase ATP-binding domain-containing protein.	AAA domain-containing protein.	0.746
FNYG_00050	FNYG_03637	A0A2K0WWD5	A0A2K0WM10	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.981
FNYG_00050	FNYG_04245	A0A2K0WWD5	A0A2K0WJT0	Helicase ATP-binding domain-containing protein.	ERCC4 domain-containing protein.	0.853
FNYG_00050	FNYG_04589	A0A2K0WWD5	A0A2K0WIC4	Helicase ATP-binding domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.996
FNYG_00050	FNYG_04881	A0A2K0WWD5	A0A2K0WHZ2	Helicase ATP-binding domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.753
FNYG_00050	FNYG_04953	A0A2K0WWD5	A0A2K0WI13	Helicase ATP-binding domain-containing protein.	DNA ligase.	0.797
FNYG_00050	FNYG_05134	A0A2K0WWD5	A0A2K0WH82	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.997
FNYG_00050	FNYG_05798	A0A2K0WWD5	A0A2K0WEX4	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.522
FNYG_00050	FNYG_06304	A0A2K0WWD5	A0A2K0WEI8	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.843
FNYG_00050	FNYG_07051	A0A2K0WWD5	A0A2K0WBP8	Helicase ATP-binding domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.813
FNYG_00050	FNYG_08381	A0A2K0WWD5	A0A2K0W833	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.979