STRINGSTRING
spoIID spoIID EDS75788.1 EDS75788.1 EDS75125.1 EDS75125.1 sasPA sasPA EDS75152.1 EDS75152.1 EDS74922.1 EDS74922.1 EDS74947.1 EDS74947.1 EDS74956.1 EDS74956.1 EDS75006.1 EDS75006.1 EDS75007.1 EDS75007.1 EDS75021.1 EDS75021.1 spoIVA spoIVA cotE cotE yabP yabP EDS74606.1 EDS74606.1 cwlJ cwlJ gpr gpr spoIIP spoIIP EDS74306.1 EDS74306.1 EDS74307.1 EDS74307.1 EDS74309.1 EDS74309.1 spoIIAB spoIIAB sigF sigF lepB-2 lepB-2 EDS74313.1 EDS74313.1 EDS74314.1 EDS74314.1 sigE sigE spoVAC spoVAC spoVAD spoVAD EDS74431.1 EDS74431.1 EDS74432.1 EDS74432.1 EDS73819.1 EDS73819.1 EDS73960.1 EDS73960.1 EDS73961.1 EDS73961.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
spoIIDCOG: COG2385 Sporulation protein and related proteins. (300 aa)
EDS75788.1Peptidase, M23 family; KEGG: bas:BUsg310 1.6e-06 yebA; hypothetical 46.7 kD protein in msbB-ruvB; COG: COG0739 Membrane proteins related to metalloendopeptidases. (213 aa)
EDS75125.1Small, acid-soluble spore protein, alpha/beta type; COG: NOG16862 non supervised orthologous group; Psort location: Extracellular, score: 8.82. (71 aa)
sasPASmall, acid-soluble spore protein A; COG: NOG16862 non supervised orthologous group; Psort location: Extracellular, score: 8.82. (72 aa)
EDS75152.1Polysaccharide biosynthesis protein; KEGG: cac:CAC3205 0.0061 spoIIE; stage II sporulation protein E, serine phosphatase family K06382; COG: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; Psort location: CytoplasmicMembrane, score: 9.99. (435 aa)
EDS74922.1RNA polymerase sigma-K factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (228 aa)
EDS74947.1Putative SpoIVB peptidase; KEGG: btl:BALH_3781 6.9e-53 spoIVB; stage IV sporulation protein B; COG: COG0750 Predicted membrane-associated Zn-dependent proteases 1. (345 aa)
EDS74956.1Hypothetical protein; COG: NOG14253 non supervised orthologous group. (156 aa)
EDS75006.1Putative dipicolinic acid synthetase, B subunit; KEGG: bcz:BCZK3561 2.9e-38 dapB; dipicolinate synthase subunit B K06411; COG: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; Psort location: Cytoplasmic, score: 8.87. (195 aa)
EDS75007.1KEGG: bcz:BCZK3562 8.0e-08 dapA; dipicolinate synthase subunit A K06410; COG: NOG06157 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (249 aa)
EDS75021.1Conserved hypothetical protein TIGR03982; COG: COG2323 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 7.63. (232 aa)
spoIVAStage IV sporulation protein A; KEGG: cno:NT01CX_0264 0.0018 hemA; glutamyl-tRNA reductase K00155; COG: NOG05962 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (491 aa)
cotESpore coat protein E; COG: NOG09743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (180 aa)
yabPSporulation protein YabP; COG: NOG13819 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (99 aa)
EDS74606.1Putative spore coat protein GerQ; COG: NOG14257 non supervised orthologous group. (111 aa)
cwlJKEGG: bcz:BCZK2341 4.5e-26 cwlJ; cell wall hydrolase K01449; COG: COG3773 Cell wall hydrolyses involved in spore germination; Psort location: Cytoplasmic, score: 8.87. (145 aa)
gprKEGG: bli:BL02089 5.7e-42 gpr; spore protease K06012; COG: NOG08575 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (328 aa)
spoIIPStage II sporulation protein P; COG: NOG06343 non supervised orthologous group. (245 aa)
EDS74306.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (59 aa)
EDS74307.1Hypothetical protein. (61 aa)
EDS74309.1STAS domain protein; KEGG: msu:MS1346 0.0064 hemH; protoheme ferro-lyase (ferrochelatase) K01772; COG: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family. (107 aa)
spoIIABAnti-sigma F factor; KEGG: cpr:CPR_2021 9.4e-33 spoIIAB; anti-sigma F factor K06379; COG: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); Psort location: Cytoplasmic, score: 8.87. (144 aa)
sigFKEGG: hpa:HPAG1_0089 4.4e-23 RNA polymerase sigma-80 factor K00960; COG: COG1191 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score: 9.98; Belongs to the sigma-70 factor family. (239 aa)
lepB-2Signal peptidase I; KEGG: ctc:CTC01253 9.3e-26 putative signal peptidase I K03100; COG: COG0681 Signal peptidase I; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the peptidase S26 family. (171 aa)
EDS74313.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (52 aa)
EDS74314.1Reverse transcriptase (RNA-dependent DNA polymerase); KEGG: pol:Bpro_5394 2.2e-79 RNA-directed DNA polymerase K00986; COG: COG3344 Retron-type reverse transcriptase; Psort location: Cytoplasmic, score: 8.87. (472 aa)
sigERNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (231 aa)
spoVACStage V sporulation protein AC; COG: NOG09745 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.26. (147 aa)
spoVADStage V sporulation protein AD; COG: NOG06312 non supervised orthologous group. (325 aa)
EDS74431.1Putative stage V sporulation protein AE; COG: NOG13202 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99. (116 aa)
EDS74432.1Hypothetical protein; COG: NOG05963 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 7.80. (425 aa)
EDS73819.1KEGG: oih:OB0074 1.3e-40 stage II sporulation protein E K06382; COG: COG2208 Serine phosphatase RsbU, regulator of sigma subunit; Psort location: CytoplasmicMembrane, score: 9.99. (737 aa)
EDS73960.1Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. (271 aa)
EDS73961.1Putative sporulation transcription factor Spo0A; KEGG: ava:Ava_B0029 7.3e-05 two component transcriptional regulator, LuxR family; COG: COG0784 FOG: CheY-like receiver. (247 aa)
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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