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rplX rplX rpsI rpsI ACS62151.1 ACS62151.1 rpsP rpsP rpmF rpmF rpmE2 rpmE2 rpsF rpsF rpsR rpsR rplI rplI rpsB rpsB rplT rplT rpmI rpmI rpsO rpsO rpmB rpmB rpmG rpmG rpsT rpsT rpmA rpmA ACS64125.1 ACS64125.1 rpsD rpsD rpsK rpsK rpmJ rpmJ rplO rplO rpmD rpmD rpsE rpsE rplR rplR rplF rplF rpsH rpsH rpsN rpsN rplE rplE rpsL rpsL rpsG rpsG rpsJ rpsJ rplC rplC rplD rplD rplW rplW rplB rplB rpsS rpsS rplV rplV rpsC rpsC rplP rplP rpmC rpmC rpsQ rpsQ rplN rplN rplM rplM rplL rplL rplJ rplJ rplK rplK rpsU rpsU rpmH rpmH ACS65785.1 ACS65785.1 rplY rplY ACS61596.1 ACS61596.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rplXRibosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (102 aa)
rpsIPFAM: ribosomal protein S9; KEGG: rso:RSc0491 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (130 aa)
ACS62151.1Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (562 aa)
rpsPTIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: rso:RSc0933 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (84 aa)
rpmFTIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: bpy:Bphyt_2914 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (59 aa)
rpmE2TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: cti:RALTA_A1943 50S ribosomal protein L31, type B subfamily. (86 aa)
rpsFRibosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (122 aa)
rpsRRibosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (95 aa)
rplIRibosomal protein L9; Binds to the 23S rRNA. (150 aa)
rpsBTIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: rso:RSc1404 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (247 aa)
rplTRibosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (118 aa)
rpmITIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: rso:RSc1579 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (65 aa)
rpsORibosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)
rpmBTIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: rso:RSc2445 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (77 aa)
rpmGTIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: rso:RSc2446 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (56 aa)
rpsTRibosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa)
rpmATIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: rso:RSc2821 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (86 aa)
ACS64125.1PFAM: Stringent starvation protein B; KEGG: rso:RSc2925 ClpXP protease specificity-enhancing factor. (165 aa)
rpsDRibosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (207 aa)
rpsKRibosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (133 aa)
rpmJTIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: rso:RSc2997 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (38 aa)
rplORibosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (143 aa)
rpmDTIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: rso:RSc3001 50S ribosomal protein L30. (60 aa)
rpsERibosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (172 aa)
rplRRibosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (118 aa)
rplFRibosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa)
rpsHRibosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (131 aa)
rpsNRibosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa)
rplERibosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (180 aa)
rpsLRibosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (125 aa)
rpsGRibosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
rpsJRibosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa)
rplCRibosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (217 aa)
rplDRibosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. (206 aa)
rplWRibosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (104 aa)
rplBRibosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (276 aa)
rpsSRibosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (91 aa)
rplVRibosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (109 aa)
rpsCRibosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (264 aa)
rplPRibosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (138 aa)
rpmCTIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: rso:RSc3011 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (64 aa)
rpsQRibosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (89 aa)
rplNRibosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rplMRibosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa)
rplLRibosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (124 aa)
rplJRibosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (168 aa)
rplKRibosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (143 aa)
rpsUTIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: rso:RSc0008 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (70 aa)
rpmHTIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: rso:RSc0001 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)
ACS65785.1KEGG: bmv:BMASAVP1_A1952 ribosomal subunit interface protein. (105 aa)
rplYRibosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (208 aa)
ACS61596.1TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: rso:RSc0407 putative sigma-54 modulation protein. (117 aa)
Your Current Organism:
Ralstonia pickettii 12D
NCBI taxonomy Id: 428406
Other names: R. pickettii 12D, Ralstonia pickettii str. 12D, Ralstonia pickettii strain 12D
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