(6 nodes) Ribosome network (Ammonifex degensii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rplU	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (102 aa)
	rpmA	TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: xac:XAC1249 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (87 aa)
	rplM	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa)
	rpsI	PFAM: ribosomal protein S9; KEGG: glo:Glov_3190 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (131 aa)
	rpsP	TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dma:DMR_34700 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (82 aa)
	rpsO	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)

Your Current Organism:

Ammonifex degensii

NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplU	Adeg_0211	Adeg_0179	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.990
rplM	rpmA	Adeg_0211	Adeg_0180	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: xac:XAC1249 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.993
rplM	rpsI	Adeg_0211	Adeg_0212	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein S9; KEGG: glo:Glov_3190 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsO	Adeg_0211	Adeg_1657	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.993
rplM	rpsP	Adeg_0211	Adeg_1416	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dma:DMR_34700 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.991
rplU	rplM	Adeg_0179	Adeg_0211	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.990
rplU	rpmA	Adeg_0179	Adeg_0180	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: xac:XAC1249 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplU	rpsI	Adeg_0179	Adeg_0212	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	PFAM: ribosomal protein S9; KEGG: glo:Glov_3190 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.991
rplU	rpsO	Adeg_0179	Adeg_1657	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.970
rplU	rpsP	Adeg_0179	Adeg_1416	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dma:DMR_34700 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.992
rpmA	rplM	Adeg_0180	Adeg_0211	TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: xac:XAC1249 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.993
rpmA	rplU	Adeg_0180	Adeg_0179	TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: xac:XAC1249 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rpmA	rpsI	Adeg_0180	Adeg_0212	TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: xac:XAC1249 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	PFAM: ribosomal protein S9; KEGG: glo:Glov_3190 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.994
rpmA	rpsO	Adeg_0180	Adeg_1657	TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: xac:XAC1249 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.992
rpmA	rpsP	Adeg_0180	Adeg_1416	TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: xac:XAC1249 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dma:DMR_34700 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.992
rpsI	rplM	Adeg_0212	Adeg_0211	PFAM: ribosomal protein S9; KEGG: glo:Glov_3190 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rpsI	rplU	Adeg_0212	Adeg_0179	PFAM: ribosomal protein S9; KEGG: glo:Glov_3190 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.991
rpsI	rpmA	Adeg_0212	Adeg_0180	PFAM: ribosomal protein S9; KEGG: glo:Glov_3190 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: xac:XAC1249 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.994
rpsI	rpsO	Adeg_0212	Adeg_1657	PFAM: ribosomal protein S9; KEGG: glo:Glov_3190 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998
rpsI	rpsP	Adeg_0212	Adeg_1416	PFAM: ribosomal protein S9; KEGG: glo:Glov_3190 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dma:DMR_34700 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.998