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| | rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (149 aa) |
| | rpsM | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (123 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (128 aa) |
| | rplQ | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: pca:Pcar_0729 50S ribosomal protein L17. (113 aa) |
| | Adeg_1462 | Hypothetical protein. (278 aa) |
| | Adeg_1446 | ADP-ribosyl-(dinitrogen reductase) hydrolase; PFAM: ADP-ribosylation/Crystallin J1; KEGG: gme:Gmet_0680 ADP-ribosylation/crystallin J1. (329 aa) |
| | rpsP | TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dma:DMR_34700 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (82 aa) |
| | Adeg_1394 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (551 aa) |
| | Adeg_1373 | Replicative DNA helicase-like protein; KEGG: lhk:LHK_01738 DnaB. (460 aa) |
| | Adeg_1371 | KEGG: mxa:MXAN_1883 hypothetical protein. (550 aa) |
| | Adeg_1370 | PFAM: ATP-binding region ATPase domain protein; KEGG: afw:Anae109_2771 DNA topoisomerase VI subunit B. (882 aa) |
| | Adeg_1369 | Hypothetical protein. (89 aa) |
| | Adeg_1302 | PFAM: CBS domain containing protein; Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; phosphoesterase RecJ domain protein; SMART: CBS domain containing protein; KEGG: sfu:Sfum_0679 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (769 aa) |
| | Adeg_1290 | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. (137 aa) |
| | Adeg_1277 | Methenyltetrahydrofolate cyclohydrolase; PFAM: Formiminotransferase-cyclodeaminase; KEGG: mca:MCA0507 methenyltetrahydrofolate cyclohydrolase. (210 aa) |
| | Adeg_1263 | Transcriptional regulator, TraR/DksA family; TIGRFAM: sporulation protein, yteA family; PFAM: zinc finger DksA/TraR C4-type; KEGG: dma:DMR_28820 putative DnaK suppressor protein. (176 aa) |
| | Adeg_1249 | PFAM: protein of unknown function DUF1458; KEGG: dal:Dalk_0950 protein of unknown function DUF1458. (64 aa) |
| | Adeg_1178 | KEGG: sfu:Sfum_2502 hypothetical protein. (430 aa) |
| | Adeg_0966 | PFAM: class II aldolase/adducin family protein; KEGG: pca:Pcar_3030 L-fuculose-1-phosphate aldolase. (217 aa) |
| | rpmF | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gur:Gura_1873 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (60 aa) |
| | Adeg_0890 | KEGG: gsu:GSU2827 hypothetical protein. (94 aa) |
| | Adeg_0877 | KEGG: pae:PA0724 putative coat protein A of bacteriophage Pf1. (140 aa) |
| | Adeg_0874 | Replicative DNA helicase-like protein; KEGG: lhk:LHK_01738 DnaB. (460 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (730 aa) |
| | Adeg_0855 | PFAM: RQC domain. (607 aa) |
| | Adeg_0853 | PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ade:Adeh_2708 ATPase associated with various cellular activities, AAA-5. (306 aa) |
| | Adeg_0711 | PFAM: restriction endonuclease; KEGG: bph:Bphy_6871 restriction endonuclease. (168 aa) |
| | Adeg_0703 | TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: sat:SYN_01838 putative cytoplasmic protein. (409 aa) |
| | Adeg_0702 | Hypothetical protein. (115 aa) |
| | Adeg_0693 | PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; KEGG: gme:Gmet_0394 DNA primase. (407 aa) |
| | Adeg_0684 | PFAM: RNA binding S1 domain protein; KEGG: hypothetical protein LOC100148185. (274 aa) |
| | rpsB | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: gsu:GSU1921 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (243 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (686 aa) |
| | rpmI | TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: sat:SYN_01719 50S ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. (66 aa) |
| | hpf | Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (177 aa) |
| | Adeg_0412 | KEGG: dma:DMR_07210 hypothetical protein. (911 aa) |
| | Adeg_0393 | DNA-(apurinic or apyrimidinic site) lyase; KEGG: lch:Lcho_2655 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; SMART: HhH-GPD family protein. (240 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (148 aa) |
| | rpsI | PFAM: ribosomal protein S9; KEGG: glo:Glov_3190 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (131 aa) |
| | rplM | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa) |
| | Adeg_0193 | TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sat:SYN_02795 diaminopimelate aminotransferase. (421 aa) |
| | rpmA | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: xac:XAC1249 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (87 aa) |
| | rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (102 aa) |
| | rpsU | TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: xfm:Xfasm12_1804 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (58 aa) |
| | Adeg_0072 | PFAM: CMP/dCMP deaminase zinc-binding; KEGG: gem:GM21_1224 dCMP deaminase. (162 aa) |
| | rpmE | Ribosomal protein L31; Binds the 23S rRNA. (66 aa) |
| | Adeg_0024 | PFAM: zinc finger CHC2-family protein; SMART: zinc finger CHC2-family protein; KEGG: cvi:CV_3763 DNA primase. (200 aa) |
| | Adeg_0023 | KEGG: pca:Pcar_0796 hypothetical protein. (576 aa) |
| | pdxS | Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (293 aa) |
| | gyrB | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (636 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (358 aa) |
| | rpmH | TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: ank:AnaeK_4498 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
| | Adeg_2145 | KEGG: aeh:Mlg_2877 ParB-like partition proteins; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the ParB family. (283 aa) |
| | Adeg_2143 | Hypothetical protein. (163 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (95 aa) |
| | rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (76 aa) |
| | Adeg_2134 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (441 aa) |
| | Adeg_2129 | Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (102 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (198 aa) |
| | Adeg_2091 | PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: Tetratricopeptide repeat; KEGG: dvl:Dvul_0116 TPR repeat-containing protein. (212 aa) |
| | Adeg_2069 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (95 aa) |
| | Adeg_2016 | PFAM: O-antigen polymerase; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dps:DPPB82 related to polysaccharide transport proteins. (769 aa) |
| | Adeg_2000 | KEGG: sfu:Sfum_2502 hypothetical protein. (431 aa) |
| | rpmB | TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: afw:Anae109_2515 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (63 aa) |
| | Adeg_1964 | PFAM: Circadian clock protein KaiC central region; KEGG: nis:NIS_1761 ATPase. (281 aa) |
| | rpmG | TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: gsu:GSU2870 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | rplK | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (142 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (232 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (176 aa) |
| | rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (128 aa) |
| | Adeg_1910 | KEGG: dal:Dalk_3532 magnesium chelatase; PFAM: magnesium chelatase ChlI subunit; von Willebrand factor type A; SMART: von Willebrand factor type A; AAA ATPase. (660 aa) |
| | Adeg_1881 | PFAM: Silent information regulator protein Sir2; KEGG: sat:SYN_01020 Sir2 family NAD-dependent deacetylase. (252 aa) |
| | Adeg_1867 | TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (326 aa) |
| | Adeg_1863 | Ribulose bisphosphate carboxylase, type III; KEGG: tcx:Tcr_0838 ribulose bisophosphate carboxylase; TIGRFAM: ribulose bisphosphate carboxylase, type III; PFAM: ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase, large subunit-like; Belongs to the RuBisCO large chain family. (421 aa) |
| | Adeg_1862 | PFAM: phosphoribulokinase/uridine kinase; KEGG: phosphoribulokinase; K00855 phosphoribulokinase. (299 aa) |
| | rplY | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (197 aa) |
| | Adeg_1748 | Hypothetical protein; KEGG: mms:mma_2886 RecN DNA repair protein. (222 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (246 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (611 aa) |
| | Adeg_1703 | TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: hypothetical protein. (263 aa) |
| | Adeg_1702 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: hha:Hhal_0638 IstB ATP binding domain-containing protein. (245 aa) |
| | Adeg_1676 | PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: ppd:Ppro_0490 NAD-dependent epimerase/dehydratase. (296 aa) |
| | Adeg_1671 | PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: kpe:KPK_3289 peptidase, ArgE/DapE family. (367 aa) |
| | Adeg_1667 | TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: hdu:HD1810 thioredoxin; Belongs to the thioredoxin family. (110 aa) |
| | Adeg_1663 | PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: ppd:Ppro_0962 hypothetical protein. (106 aa) |
| | Adeg_1660 | PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: pca:Pcar_1558 exopolyphosphatase related protein. (332 aa) |
| | rpsO | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | Adeg_1643 | PFAM: copper amine oxidase domain protein; KEGG: pct:PC1_3060 von Willebrand factor type A. (763 aa) |
| | rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (89 aa) |
| | Adeg_1541 | TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; helix-hairpin-helix motif; KEGG: gur:Gura_4138 DNA repair protein RadC; Belongs to the UPF0758 family. (232 aa) |
| | rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsJ | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (209 aa) |
| | rplW | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (94 aa) |
| | rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (275 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (94 aa) |
| | rpsC | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (220 aa) |
| | rpmC | TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: dal:Dalk_1907 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (69 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (99 aa) |
| | rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplX | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (107 aa) |
| | rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (183 aa) |
| | rpsZ | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (134 aa) |
| | rplR | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (121 aa) |
| | rpsE | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (173 aa) |
| | rpmD | TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: eta:ETA_31450 50S ribosomal protein L30. (60 aa) |
| | rpmJ | TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: nis:NIS_0245 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (37 aa) |
