(23 nodes) Pantothenate and CoA biosynthesis network (Trichoderma reesei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G0R842_HYPJQ	Dehydratase. (616 aa)
	G0R861_HYPJQ	Small regulatory subunit of acetolactate synthase. (311 aa)
	G0R8I4_HYPJQ	Pantoate-beta-alanine ligase. (366 aa)
	G0R8N2_HYPJQ	Acetolactate synthase. (683 aa)
	G0RA25_HYPJQ	Predicted protein. (172 aa)
	G0RAK2_HYPJQ	Predicted protein. (435 aa)
	G0RBY4_HYPJQ	Branched-chain amino acid aminotransferase. (400 aa)
	G0RC37_HYPJQ	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (409 aa)
	G0RFA6_HYPJQ	Dehydratase. (607 aa)
	G0RG01_HYPJQ	Predicted protein. (373 aa)
	G0RHB4_HYPJQ	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (493 aa)
	G0RJB2_HYPJQ	Predicted protein; Belongs to the aldehyde dehydrogenase family. (530 aa)
	G0RJV5_HYPJQ	Predicted protein. (450 aa)
	G0RKZ7_HYPJQ	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (496 aa)
	G0RNW7_HYPJQ	Predicted protein; Belongs to the aldehyde dehydrogenase family. (502 aa)
	G0RQ21_HYPJQ	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate. (292 aa)
	G0RQB8_HYPJQ	Predicted protein. (274 aa)
	G0RQN2_HYPJQ	Predicted protein. (285 aa)
	G0RQR9_HYPJQ	Dehydratase family. (604 aa)
	G0RRQ9_HYPJQ	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (495 aa)
	G0RTE6_HYPJQ	Ketol-acid reductoisomerase, mitochondrial; Belongs to the ketol-acid reductoisomerase family. (404 aa)
	G0RUQ0_HYPJQ	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (410 aa)
	G0RUQ1_HYPJQ	Predicted protein. (240 aa)

Your Current Organism:

Trichoderma reesei

NCBI taxonomy Id: 431241
Other names: T. reesei QM6a, Trichoderma reesei QM6a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G0R842_HYPJQ	G0R861_HYPJQ	G0R842	G0R861	Dehydratase.	Small regulatory subunit of acetolactate synthase.	0.673
G0R842_HYPJQ	G0R8N2_HYPJQ	G0R842	G0R8N2	Dehydratase.	Acetolactate synthase.	0.766
G0R842_HYPJQ	G0RBY4_HYPJQ	G0R842	G0RBY4	Dehydratase.	Branched-chain amino acid aminotransferase.	0.968
G0R842_HYPJQ	G0RC37_HYPJQ	G0R842	G0RC37	Dehydratase.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.968
G0R842_HYPJQ	G0RFA6_HYPJQ	G0R842	G0RFA6	Dehydratase.	Dehydratase.	0.912
G0R842_HYPJQ	G0RQ21_HYPJQ	G0R842	G0RQ21	Dehydratase.	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate.	0.928
G0R842_HYPJQ	G0RQR9_HYPJQ	G0R842	G0RQR9	Dehydratase.	Dehydratase family.	0.911
G0R842_HYPJQ	G0RTE6_HYPJQ	G0R842	G0RTE6	Dehydratase.	Ketol-acid reductoisomerase, mitochondrial; Belongs to the ketol-acid reductoisomerase family.	0.934
G0R842_HYPJQ	G0RUQ0_HYPJQ	G0R842	G0RUQ0	Dehydratase.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.968
G0R861_HYPJQ	G0R842_HYPJQ	G0R861	G0R842	Small regulatory subunit of acetolactate synthase.	Dehydratase.	0.673
G0R861_HYPJQ	G0R8N2_HYPJQ	G0R861	G0R8N2	Small regulatory subunit of acetolactate synthase.	Acetolactate synthase.	0.999
G0R861_HYPJQ	G0RBY4_HYPJQ	G0R861	G0RBY4	Small regulatory subunit of acetolactate synthase.	Branched-chain amino acid aminotransferase.	0.561
G0R861_HYPJQ	G0RC37_HYPJQ	G0R861	G0RC37	Small regulatory subunit of acetolactate synthase.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.613
G0R861_HYPJQ	G0RFA6_HYPJQ	G0R861	G0RFA6	Small regulatory subunit of acetolactate synthase.	Dehydratase.	0.714
G0R861_HYPJQ	G0RQR9_HYPJQ	G0R861	G0RQR9	Small regulatory subunit of acetolactate synthase.	Dehydratase family.	0.714
G0R861_HYPJQ	G0RTE6_HYPJQ	G0R861	G0RTE6	Small regulatory subunit of acetolactate synthase.	Ketol-acid reductoisomerase, mitochondrial; Belongs to the ketol-acid reductoisomerase family.	0.969
G0R861_HYPJQ	G0RUQ0_HYPJQ	G0R861	G0RUQ0	Small regulatory subunit of acetolactate synthase.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.561
G0R861_HYPJQ	G0RUQ1_HYPJQ	G0R861	G0RUQ1	Small regulatory subunit of acetolactate synthase.	Predicted protein.	0.406
G0R8I4_HYPJQ	G0RAK2_HYPJQ	G0R8I4	G0RAK2	Pantoate-beta-alanine ligase.	Predicted protein.	0.978
G0R8I4_HYPJQ	G0RG01_HYPJQ	G0R8I4	G0RG01	Pantoate-beta-alanine ligase.	Predicted protein.	0.871