(10 nodes) Preribosome, small subunit precursor network (Globisporangium ultimum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K3WE85_GLOUD	CBF domain-containing protein. (593 aa)
	K3W6F5_GLOUD	Uncharacterized protein. (914 aa)
	K3W7F2_GLOUD	Bms1-type G domain-containing protein. (822 aa)
	K3WB30_GLOUD	Uncharacterized protein. (684 aa)
	K3WH05_GLOUD	Uncharacterized protein. (439 aa)
	K3WQ05_GLOUD	RIO domain-containing protein. (436 aa)
	K3WU54_GLOUD	Uncharacterized protein. (278 aa)
	K3X0L7_GLOUD	Uncharacterized protein. (614 aa)
	K3X822_GLOUD	Uncharacterized protein; Belongs to the NOB1 family. (485 aa)
	K3XCA7_GLOUD	Uncharacterized protein. (562 aa)

Your Current Organism:

Globisporangium ultimum

NCBI taxonomy Id: 431595
Other names: G. ultimum DAOM BR144, Globisporangium ultimum DAOM BR144

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K3W6F5_GLOUD	K3W7F2_GLOUD	K3W6F5	K3W7F2	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.923
K3W6F5_GLOUD	K3WB30_GLOUD	K3W6F5	K3WB30	Uncharacterized protein.	Uncharacterized protein.	0.640
K3W6F5_GLOUD	K3WE85_GLOUD	K3W6F5	K3WE85	Uncharacterized protein.	CBF domain-containing protein.	0.999
K3W6F5_GLOUD	K3WH05_GLOUD	K3W6F5	K3WH05	Uncharacterized protein.	Uncharacterized protein.	0.998
K3W6F5_GLOUD	K3WQ05_GLOUD	K3W6F5	K3WQ05	Uncharacterized protein.	RIO domain-containing protein.	0.794
K3W6F5_GLOUD	K3X0L7_GLOUD	K3W6F5	K3X0L7	Uncharacterized protein.	Uncharacterized protein.	0.784
K3W6F5_GLOUD	K3X822_GLOUD	K3W6F5	K3X822	Uncharacterized protein.	Uncharacterized protein; Belongs to the NOB1 family.	0.846
K3W6F5_GLOUD	K3XCA7_GLOUD	K3W6F5	K3XCA7	Uncharacterized protein.	Uncharacterized protein.	0.926
K3W7F2_GLOUD	K3W6F5_GLOUD	K3W7F2	K3W6F5	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.923
K3W7F2_GLOUD	K3WB30_GLOUD	K3W7F2	K3WB30	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.820
K3W7F2_GLOUD	K3WE85_GLOUD	K3W7F2	K3WE85	Bms1-type G domain-containing protein.	CBF domain-containing protein.	0.775
K3W7F2_GLOUD	K3WH05_GLOUD	K3W7F2	K3WH05	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
K3W7F2_GLOUD	K3WQ05_GLOUD	K3W7F2	K3WQ05	Bms1-type G domain-containing protein.	RIO domain-containing protein.	0.997
K3W7F2_GLOUD	K3X0L7_GLOUD	K3W7F2	K3X0L7	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.727
K3W7F2_GLOUD	K3X822_GLOUD	K3W7F2	K3X822	Bms1-type G domain-containing protein.	Uncharacterized protein; Belongs to the NOB1 family.	0.998
K3W7F2_GLOUD	K3XCA7_GLOUD	K3W7F2	K3XCA7	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
K3WB30_GLOUD	K3W6F5_GLOUD	K3WB30	K3W6F5	Uncharacterized protein.	Uncharacterized protein.	0.640
K3WB30_GLOUD	K3W7F2_GLOUD	K3WB30	K3W7F2	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.820
K3WB30_GLOUD	K3WE85_GLOUD	K3WB30	K3WE85	Uncharacterized protein.	CBF domain-containing protein.	0.569
K3WB30_GLOUD	K3WH05_GLOUD	K3WB30	K3WH05	Uncharacterized protein.	Uncharacterized protein.	0.941