(8 nodes) Endoplasmic reticulum exit site network (Globisporangium ultimum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K3WPT1_GLOUD	WD_REPEATS_REGION domain-containing protein. (1197 aa)
	K3W624_GLOUD	Uncharacterized protein. (774 aa)
	K3WCB4_GLOUD	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (179 aa)
	K3WLJ2_GLOUD	Uncharacterized protein. (252 aa)
	K3WLJ3_GLOUD	Sec16 domain-containing protein. (1062 aa)
	K3WYQ7_GLOUD	Sec23_trunk domain-containing protein. (38 aa)
	K3WYQ8_GLOUD	Uncharacterized protein. (212 aa)
	K3X6J8_GLOUD	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (191 aa)

Your Current Organism:

Globisporangium ultimum

NCBI taxonomy Id: 431595
Other names: G. ultimum DAOM BR144, Globisporangium ultimum DAOM BR144

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K3W624_GLOUD	K3WCB4_GLOUD	K3W624	K3WCB4	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.995
K3W624_GLOUD	K3WLJ2_GLOUD	K3W624	K3WLJ2	Uncharacterized protein.	Uncharacterized protein.	0.920
K3W624_GLOUD	K3WLJ3_GLOUD	K3W624	K3WLJ3	Uncharacterized protein.	Sec16 domain-containing protein.	0.920
K3W624_GLOUD	K3WPT1_GLOUD	K3W624	K3WPT1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.968
K3W624_GLOUD	K3WYQ7_GLOUD	K3W624	K3WYQ7	Uncharacterized protein.	Sec23_trunk domain-containing protein.	0.975
K3W624_GLOUD	K3WYQ8_GLOUD	K3W624	K3WYQ8	Uncharacterized protein.	Uncharacterized protein.	0.975
K3W624_GLOUD	K3X6J8_GLOUD	K3W624	K3X6J8	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.823
K3WCB4_GLOUD	K3W624_GLOUD	K3WCB4	K3W624	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.995
K3WCB4_GLOUD	K3WLJ2_GLOUD	K3WCB4	K3WLJ2	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.963
K3WCB4_GLOUD	K3WLJ3_GLOUD	K3WCB4	K3WLJ3	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Sec16 domain-containing protein.	0.963
K3WCB4_GLOUD	K3WPT1_GLOUD	K3WCB4	K3WPT1	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	WD_REPEATS_REGION domain-containing protein.	0.995
K3WCB4_GLOUD	K3WYQ7_GLOUD	K3WCB4	K3WYQ7	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Sec23_trunk domain-containing protein.	0.994
K3WCB4_GLOUD	K3WYQ8_GLOUD	K3WCB4	K3WYQ8	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.994
K3WCB4_GLOUD	K3X6J8_GLOUD	K3WCB4	K3X6J8	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.990
K3WLJ2_GLOUD	K3W624_GLOUD	K3WLJ2	K3W624	Uncharacterized protein.	Uncharacterized protein.	0.920
K3WLJ2_GLOUD	K3WCB4_GLOUD	K3WLJ2	K3WCB4	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.963
K3WLJ2_GLOUD	K3WPT1_GLOUD	K3WLJ2	K3WPT1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.899
K3WLJ2_GLOUD	K3WYQ7_GLOUD	K3WLJ2	K3WYQ7	Uncharacterized protein.	Sec23_trunk domain-containing protein.	0.909
K3WLJ2_GLOUD	K3WYQ8_GLOUD	K3WLJ2	K3WYQ8	Uncharacterized protein.	Uncharacterized protein.	0.909
K3WLJ2_GLOUD	K3X6J8_GLOUD	K3WLJ2	K3X6J8	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.880