STRINGSTRING
RCL1 RCL1 DIS3 DIS3 EMG1 EMG1 NAT10 NAT10 NOP9 NOP9 WDR46 WDR46 AATF AATF RRP9 RRP9 DDX52 DDX52 EXOSC4 EXOSC4 NGDN NGDN RRP7A RRP7A IMP4 IMP4 WDR3 WDR3 KRR1 KRR1 NOL11 NOL11 MPHOSPH10 MPHOSPH10 NOL10 NOL10 EXOSC7 EXOSC7 NOP58 NOP58 DDX49 DDX49 HEATR1 HEATR1 EXOSC9 EXOSC9 DDX31 DDX31 DCAF13 DCAF13 FCF1 FCF1 Utp14a Utp14a DIS3L DIS3L SNU13 SNU13 IPO7 IPO7 NOP14 NOP14 EXOSC3 EXOSC3 MTREX MTREX FBL FBL NOP56 NOP56 TBL3 TBL3 WDR75 WDR75 Pwp2 Pwp2 PDCD11 PDCD11 WDR36 WDR36 WDR43 WDR43 BMS1 BMS1 NOL6 NOL6 UTP6 UTP6 UTP4 UTP4 UTP20 UTP20 UTP25 UTP25 UTP15 UTP15 DDX47 DDX47 Mphosph6 Mphosph6 UTP11 UTP11 I3N0G8_ICTTR I3N0G8_ICTTR UTP3 UTP3 DNTTIP2 DNTTIP2 EXOSC5 EXOSC5 EXOSC6 EXOSC6 RPS6 RPS6 NOC4L NOC4L ENSSTOP00000025355 ENSSTOP00000025355 ENSSTOP00000025407 ENSSTOP00000025407 Exosc8 Exosc8 IMP3 IMP3 C1D C1D LOC101967904 LOC101967904 EXOSC10 EXOSC10 DHX37 DHX37 LOC101967696 LOC101967696 EXOSC1 EXOSC1 Rtca Rtca ENSSTOP00000029275 ENSSTOP00000029275 LOC101957349 LOC101957349 UTP18 UTP18 EXOSC2 EXOSC2 FBLL1 FBLL1 MCC MCC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RCL1RNA terminal phosphate cyclase like 1. (373 aa)
DIS3DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (958 aa)
EMG1EMG1 N1-specific pseudouridine methyltransferase. (244 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1026 aa)
NOP9NOP9 nucleolar protein. (642 aa)
WDR46WD repeat domain 46. (619 aa)
AATFApoptosis antagonizing transcription factor. (506 aa)
RRP9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (475 aa)
DDX52DExD-box helicase 52. (322 aa)
EXOSC4Exosome component 4. (246 aa)
NGDNNeuroguidin. (315 aa)
RRP7ARibosomal RNA processing 7 homolog A. (280 aa)
IMP4IMP U3 small nucleolar ribonucleoprotein 4. (299 aa)
WDR3WD repeat domain 3. (943 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (381 aa)
NOL11Nucleolar protein 11. (710 aa)
MPHOSPH10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (679 aa)
NOL10Nucleolar protein 10. (685 aa)
EXOSC7Exosome component 7. (291 aa)
NOP58NOP58 ribonucleoprotein. (530 aa)
DDX49DEAD-box helicase 49; Belongs to the DEAD box helicase family. (483 aa)
HEATR1HEAT repeat containing 1. (2140 aa)
EXOSC9Exosome component 9. (439 aa)
DDX31RNA helicase. (681 aa)
DCAF13DDB1 and CUL4 associated factor 13. (445 aa)
FCF1PINc domain-containing protein. (199 aa)
Utp14aUncharacterized protein. (771 aa)
DIS3LDIS3 like exosome 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (1007 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
IPO7Importin 7. (1038 aa)
NOP14NOP14 nucleolar protein. (860 aa)
EXOSC3Exosome component 3. (275 aa)
MTREXMtr4 exosome RNA helicase. (1042 aa)
FBLFibrillarin. (322 aa)
NOP56NOP56 ribonucleoprotein. (595 aa)
TBL3Transducin beta like 3. (800 aa)
WDR75WD repeat domain 75. (830 aa)
Pwp2Uncharacterized protein. (923 aa)
PDCD11Programmed cell death 11. (1848 aa)
WDR36WD repeat domain 36. (1014 aa)
WDR43WD repeat domain 43. (679 aa)
BMS1BMS1 ribosome biogenesis factor. (1280 aa)
NOL6Nucleolar protein 6. (1154 aa)
UTP6UTP6 small subunit processome component. (597 aa)
UTP4UTP4 small subunit processome component. (686 aa)
UTP20UTP20 small subunit processome component. (2790 aa)
UTP25UTP25 small subunit processor component. (756 aa)
UTP15UTP15 small subunit processome component. (527 aa)
DDX47DEAD-box helicase 47; Belongs to the DEAD box helicase family. (440 aa)
Mphosph6Uncharacterized protein. (161 aa)
UTP11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (253 aa)
I3N0G8_ICTTRRibosomal_L7Ae domain-containing protein. (116 aa)
UTP3UTP3 small subunit processome component. (473 aa)
DNTTIP2Deoxynucleotidyltransferase terminal interacting protein 2. (757 aa)
EXOSC5Exosome component 5. (235 aa)
EXOSC6Exosome component 6. (272 aa)
RPS640S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (219 aa)
NOC4LNucleolar complex associated 4 homolog. (515 aa)
ENSSTOP00000025355Uncharacterized protein. (127 aa)
ENSSTOP00000025407Uncharacterized protein. (163 aa)
Exosc8RNase_PH domain-containing protein. (89 aa)
IMP3IMP U3 small nucleolar ribonucleoprotein 3. (184 aa)
C1DC1D nuclear receptor corepressor. (141 aa)
LOC101967904Uncharacterized protein. (349 aa)
EXOSC10Exosome component 10. (886 aa)
DHX37DEAH-box helicase 37. (1184 aa)
LOC101967696DUF1726 domain-containing protein. (271 aa)
EXOSC1Exosome component 1. (195 aa)
RtcaUncharacterized protein. (353 aa)
ENSSTOP00000029275ECR1_N domain-containing protein. (121 aa)
LOC101957349Uncharacterized protein. (247 aa)
UTP18UTP18 small subunit processome component. (555 aa)
EXOSC2Exosome component 2. (293 aa)
FBLL1Fibrillarin like 1. (209 aa)
MCCMCC regulator of WNT signaling pathway. (1019 aa)
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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