STRINGSTRING
VPS35 VPS35 SNX3 SNX3 SNX5 SNX5 TBC1D5 TBC1D5 SNX8 SNX8 VPS26B VPS26B VPS29 VPS29 SNX2 SNX2 SNX6 SNX6 SNX12 SNX12 SNX1 SNX1 VPS26A VPS26A SNX27 SNX27
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VPS35Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (796 aa)
SNX3Sorting nexin 3. (162 aa)
SNX5Sorting nexin; Involved in several stages of intracellular trafficking. (394 aa)
TBC1D5TBC1 domain family member 5. (818 aa)
SNX8Sorting nexin 8. (455 aa)
VPS26BVPS26, retromer complex component B. (336 aa)
VPS29Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (186 aa)
SNX2Sorting nexin 2. (523 aa)
SNX6Sorting nexin 6. (341 aa)
SNX12Sorting nexin 12. (163 aa)
SNX1Sorting nexin 1. (529 aa)
VPS26AVPS26, retromer complex component A. (327 aa)
SNX27Sorting nexin 27. (542 aa)
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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