STRINGSTRING
TGFB1 TGFB1 FGF8 FGF8 LEF1 LEF1 MRTFB MRTFB CREB1 CREB1 LOX LOX LUC7L LUC7L SMAD3 SMAD3 SOX15 SOX15 HDAC7 HDAC7 BMP4 BMP4 FGF3 FGF3 SIRT2 SIRT2 ERBB3 ERBB3 CENPF CENPF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TGFB1Transforming growth factor beta; Belongs to the TGF-beta family. (390 aa)
FGF8Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (244 aa)
LEF1Lymphoid enhancer binding factor 1. (399 aa)
MRTFBMyocardin related transcription factor B. (1081 aa)
CREB1cAMP responsive element binding protein 1. (341 aa)
LOXLysyl oxidase. (397 aa)
LUC7LLUC7 like. (371 aa)
SMAD3Mothers against decapentaplegic homolog. (425 aa)
SOX15SRY-box transcription factor 15. (249 aa)
HDAC7Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (956 aa)
BMP4Bone morphogenetic protein 4. (409 aa)
FGF3Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (220 aa)
SIRT2NAD-dependent protein deacetylase; NAD-dependent protein deacetylase. (389 aa)
ERBB3Erb-b2 receptor tyrosine kinase 3. (1248 aa)
CENPFCentromere protein F. (2997 aa)
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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