18 items (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LPIN3	Lipin 3. (841 aa)
	GPAM	Glycerol-3-phosphate acyltransferase 1, mitochondrial. (827 aa)
	Acsl6	AMP-binding domain-containing protein. (722 aa)
	LPIN2	Lipin 2. (866 aa)
	DGAT1	O-acyltransferase. (500 aa)
	LPGAT1	Lysophosphatidylglycerol acyltransferase 1. (370 aa)
	MOGAT3	Monoacylglycerol O-acyltransferase 3. (343 aa)
	GPAT3	Glycerol-3-phosphate acyltransferase 3. (370 aa)
	MOGAT1	Monoacylglycerol O-acyltransferase 1. (335 aa)
	PCK1	Phosphoenolpyruvate carboxykinase 1. (622 aa)
	PNPLA3	Patatin like phospholipase domain containing 3. (420 aa)
	GPAT4	Glycerol-3-phosphate acyltransferase 4. (456 aa)
	DGAT2	Diacylglycerol O-acyltransferase 2. (388 aa)
	MOGAT2	Monoacylglycerol O-acyltransferase 2. (334 aa)
	LPIN1	Lipin 1. (930 aa)
	PCK2	Phosphoenolpyruvate carboxykinase 2, mitochondrial. (640 aa)
	GPAT2	Glycerol-3-phosphate acyltransferase 2, mitochondrial. (801 aa)
	ACSL4	Acyl-CoA synthetase long chain family member 4. (711 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACSL4	Acsl6	ENSSTOP00000004738	ENSSTOP00000029381	Acyl-CoA synthetase long chain family member 4.	AMP-binding domain-containing protein.	0.876
ACSL4	DGAT1	ENSSTOP00000004738	ENSSTOP00000023501	Acyl-CoA synthetase long chain family member 4.	O-acyltransferase.	0.414
ACSL4	GPAT3	ENSSTOP00000004738	ENSSTOP00000019611	Acyl-CoA synthetase long chain family member 4.	Glycerol-3-phosphate acyltransferase 3.	0.567
ACSL4	GPAT4	ENSSTOP00000004738	ENSSTOP00000011397	Acyl-CoA synthetase long chain family member 4.	Glycerol-3-phosphate acyltransferase 4.	0.567
ACSL4	LPGAT1	ENSSTOP00000004738	ENSSTOP00000021729	Acyl-CoA synthetase long chain family member 4.	Lysophosphatidylglycerol acyltransferase 1.	0.536
ACSL4	PNPLA3	ENSSTOP00000004738	ENSSTOP00000012596	Acyl-CoA synthetase long chain family member 4.	Patatin like phospholipase domain containing 3.	0.853
Acsl6	ACSL4	ENSSTOP00000029381	ENSSTOP00000004738	AMP-binding domain-containing protein.	Acyl-CoA synthetase long chain family member 4.	0.876
Acsl6	DGAT1	ENSSTOP00000029381	ENSSTOP00000023501	AMP-binding domain-containing protein.	O-acyltransferase.	0.416
Acsl6	GPAT3	ENSSTOP00000029381	ENSSTOP00000019611	AMP-binding domain-containing protein.	Glycerol-3-phosphate acyltransferase 3.	0.505
Acsl6	GPAT4	ENSSTOP00000029381	ENSSTOP00000011397	AMP-binding domain-containing protein.	Glycerol-3-phosphate acyltransferase 4.	0.512
Acsl6	LPGAT1	ENSSTOP00000029381	ENSSTOP00000021729	AMP-binding domain-containing protein.	Lysophosphatidylglycerol acyltransferase 1.	0.509
Acsl6	PNPLA3	ENSSTOP00000029381	ENSSTOP00000012596	AMP-binding domain-containing protein.	Patatin like phospholipase domain containing 3.	0.881
DGAT1	ACSL4	ENSSTOP00000023501	ENSSTOP00000004738	O-acyltransferase.	Acyl-CoA synthetase long chain family member 4.	0.414
DGAT1	Acsl6	ENSSTOP00000023501	ENSSTOP00000029381	O-acyltransferase.	AMP-binding domain-containing protein.	0.416
DGAT1	DGAT2	ENSSTOP00000023501	ENSSTOP00000010781	O-acyltransferase.	Diacylglycerol O-acyltransferase 2.	0.960
DGAT1	GPAM	ENSSTOP00000023501	ENSSTOP00000031912	O-acyltransferase.	Glycerol-3-phosphate acyltransferase 1, mitochondrial.	0.482
DGAT1	GPAT4	ENSSTOP00000023501	ENSSTOP00000011397	O-acyltransferase.	Glycerol-3-phosphate acyltransferase 4.	0.436
DGAT1	LPIN1	ENSSTOP00000023501	ENSSTOP00000009738	O-acyltransferase.	Lipin 1.	0.918
DGAT1	LPIN2	ENSSTOP00000023501	ENSSTOP00000025203	O-acyltransferase.	Lipin 2.	0.897
DGAT1	LPIN3	ENSSTOP00000023501	ENSSTOP00000017454	O-acyltransferase.	Lipin 3.	0.897