STRINGSTRING
CSTF1 CSTF1 LSM10 LSM10 MTPAP MTPAP I3LY53_ICTTR I3LY53_ICTTR SYMPK SYMPK NCBP2 NCBP2 CPSF4L CPSF4L RPRD2 RPRD2 Tut1 Tut1 Ssu72 Ssu72 RPRD1A RPRD1A PABPC1L PABPC1L ZC3H3 ZC3H3 CPSF3 CPSF3 PCF11 PCF11 WDR33 WDR33 NUDT21 NUDT21 CPSF7 CPSF7 CPSF2 CPSF2 CPSF1 CPSF1 PAPOLG PAPOLG FIP1L1 FIP1L1 RPRD1B RPRD1B CSTF3 CSTF3 CPSF6 CPSF6 PAF1 PAF1 AHCYL1 AHCYL1 TENT2 TENT2 MBLAC1 MBLAC1 CSTF2T CSTF2T CDC73 CDC73 POLR2D POLR2D PNPT1 PNPT1 CLP1 CLP1 CSTF2 CSTF2 LEO1 LEO1 APLP1 APLP1 PAPOLA PAPOLA SLBP SLBP ZNF473 ZNF473 APP APP ENSSTOP00000028059 ENSSTOP00000028059 NCBP1 NCBP1 SCAF8 SCAF8 CPSF4 CPSF4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CSTF1Cleavage stimulation factor subunit 1. (431 aa)
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
MTPAPMitochondrial poly(A) polymerase. (585 aa)
I3LY53_ICTTRUncharacterized protein. (200 aa)
SYMPKSymplekin. (1271 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (163 aa)
CPSF4LCleavage and polyadenylation specific factor 4 like. (174 aa)
RPRD2Regulation of nuclear pre-mRNA domain containing 2. (1470 aa)
Tut1RRM domain-containing protein. (875 aa)
Ssu72Uncharacterized protein. (194 aa)
RPRD1ARegulation of nuclear pre-mRNA domain containing 1A. (312 aa)
PABPC1LPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (614 aa)
ZC3H3Zinc finger CCCH-type containing 3. (958 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (684 aa)
PCF11PCF11 cleavage and polyadenylation factor subunit. (1684 aa)
WDR33WD repeat domain 33. (1336 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (471 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
CPSF1Cleavage and polyadenylation specific factor 1. (1411 aa)
PAPOLGPoly(A) polymerase gamma. (741 aa)
FIP1L1Fip1 domain-containing protein. (580 aa)
RPRD1BRegulation of nuclear pre-mRNA domain containing 1B. (326 aa)
CSTF3Cleavage stimulation factor subunit 3. (717 aa)
CPSF6Cleavage and polyadenylation specific factor 6. (618 aa)
PAF1PAF1 homolog, Paf1/RNA polymerase II complex component. (529 aa)
AHCYL1Adenosylhomocysteinase like 1; Belongs to the adenosylhomocysteinase family. (530 aa)
TENT2Terminal nucleotidyltransferase 2. (483 aa)
MBLAC1Metallo-beta-lactamase domain containing 1. (271 aa)
CSTF2TCleavage stimulation factor subunit 2 tau variant. (616 aa)
CDC73Cell division cycle 73. (531 aa)
POLR2DRNA polymerase II subunit D. (142 aa)
PNPT1Polyribonucleotide nucleotidyltransferase 1. (784 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (425 aa)
CSTF2Cleavage stimulation factor subunit 2. (571 aa)
LEO1LEO1 homolog, Paf1/RNA polymerase II complex component. (666 aa)
APLP1Amyloid beta precursor like protein 1. (652 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (739 aa)
SLBPStem-loop binding protein. (275 aa)
ZNF473Zinc finger protein 473. (886 aa)
APPAmyloid beta precursor protein. (739 aa)
ENSSTOP00000028059Uncharacterized protein. (215 aa)
NCBP1Nuclear cap binding protein subunit 1. (790 aa)
SCAF8SR-related CTD associated factor 8. (1268 aa)
CPSF4Cleavage and polyadenylation specific factor 4. (269 aa)
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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