13 items (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CETP	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family. (495 aa)
	Pltp	BPI1 domain-containing protein. (147 aa)
	LIPG	Lipase G, endothelial type. (500 aa)
	LCAT	Lecithin-cholesterol acyltransferase. (440 aa)
	ABCG1	ATP binding cassette subfamily G member 1. (666 aa)
	SCARB1	Scavenger receptor class B member 1; Belongs to the CD36 family. (430 aa)
	APOA2	Apolipoprotein A2. (101 aa)
	ABCA5	ATP binding cassette subfamily A member 5. (1642 aa)
	APOC3	Apolipoprotein C3. (130 aa)
	LIPC	Lipase C, hepatic type. (463 aa)
	APOM	Apolipoprotein M. (188 aa)
	PLA2G3	Phospholipase A2 group III. (626 aa)
	APOA1	Apolipoprotein A1. (264 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCA5	APOA1	ENSSTOP00000022751	ENSSTOP00000002077	ATP binding cassette subfamily A member 5.	Apolipoprotein A1.	0.569
ABCG1	APOA1	ENSSTOP00000016494	ENSSTOP00000002077	ATP binding cassette subfamily G member 1.	Apolipoprotein A1.	0.799
ABCG1	APOA2	ENSSTOP00000016494	ENSSTOP00000020847	ATP binding cassette subfamily G member 1.	Apolipoprotein A2.	0.451
ABCG1	Pltp	ENSSTOP00000016494	ENSSTOP00000004557	ATP binding cassette subfamily G member 1.	BPI1 domain-containing protein.	0.408
ABCG1	SCARB1	ENSSTOP00000016494	ENSSTOP00000018988	ATP binding cassette subfamily G member 1.	Scavenger receptor class B member 1; Belongs to the CD36 family.	0.522
APOA1	ABCA5	ENSSTOP00000002077	ENSSTOP00000022751	Apolipoprotein A1.	ATP binding cassette subfamily A member 5.	0.569
APOA1	ABCG1	ENSSTOP00000002077	ENSSTOP00000016494	Apolipoprotein A1.	ATP binding cassette subfamily G member 1.	0.799
APOA1	APOA2	ENSSTOP00000002077	ENSSTOP00000020847	Apolipoprotein A1.	Apolipoprotein A2.	0.987
APOA1	APOC3	ENSSTOP00000002077	ENSSTOP00000022848	Apolipoprotein A1.	Apolipoprotein C3.	0.982
APOA1	APOM	ENSSTOP00000002077	ENSSTOP00000031036	Apolipoprotein A1.	Apolipoprotein M.	0.676
APOA1	CETP	ENSSTOP00000002077	ENSSTOP00000003181	Apolipoprotein A1.	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	0.894
APOA1	LCAT	ENSSTOP00000002077	ENSSTOP00000015769	Apolipoprotein A1.	Lecithin-cholesterol acyltransferase.	0.991
APOA1	LIPC	ENSSTOP00000002077	ENSSTOP00000030828	Apolipoprotein A1.	Lipase C, hepatic type.	0.677
APOA1	LIPG	ENSSTOP00000002077	ENSSTOP00000014330	Apolipoprotein A1.	Lipase G, endothelial type.	0.448
APOA1	Pltp	ENSSTOP00000002077	ENSSTOP00000004557	Apolipoprotein A1.	BPI1 domain-containing protein.	0.880
APOA1	SCARB1	ENSSTOP00000002077	ENSSTOP00000018988	Apolipoprotein A1.	Scavenger receptor class B member 1; Belongs to the CD36 family.	0.903
APOA2	ABCG1	ENSSTOP00000020847	ENSSTOP00000016494	Apolipoprotein A2.	ATP binding cassette subfamily G member 1.	0.451
APOA2	APOA1	ENSSTOP00000020847	ENSSTOP00000002077	Apolipoprotein A2.	Apolipoprotein A1.	0.987
APOA2	APOC3	ENSSTOP00000020847	ENSSTOP00000022848	Apolipoprotein A2.	Apolipoprotein C3.	0.984
APOA2	APOM	ENSSTOP00000020847	ENSSTOP00000031036	Apolipoprotein A2.	Apolipoprotein M.	0.795