32 items (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AUP1	AUP1 lipid droplet regulating VLDL assembly factor. (440 aa)
	SQLE	Squalene epoxidase. (574 aa)
	FITM1	Fat storage inducing transmembrane protein 1. (292 aa)
	TMEM159	Transmembrane protein 159. (161 aa)
	CDS2	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin. (445 aa)
	CIDEC	Cell death inducing DFFA like effector c. (252 aa)
	PPID	Peptidylprolyl isomerase D. (370 aa)
	PLA2G4C	Phospholipase A2 group IVC. (571 aa)
	PRKAA1	Non-specific serine/threonine protein kinase. (561 aa)
	PRKAA2	Non-specific serine/threonine protein kinase. (552 aa)
	PTGFRN	Prostaglandin F2 receptor inhibitor. (862 aa)
	ZFYVE1	Zinc finger FYVE-type containing 1. (777 aa)
	CDS1	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin. (461 aa)
	SMIM22	Small integral membrane protein 22. (90 aa)
	KAT5	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (546 aa)
	CHKA	Choline kinase alpha. (411 aa)
	PNPLA3	Patatin like phospholipase domain containing 3. (420 aa)
	Rab18	RAB18, member RAS oncogene family. (206 aa)
	SPART	Spartin. (665 aa)
	LRRN4CL	LRRN4 C-terminal like. (237 aa)
	FITM2	Fat storage inducing transmembrane protein 2. (262 aa)
	PLIN3	Perilipin; Belongs to the perilipin family. (465 aa)
	PLIN5	Perilipin; Belongs to the perilipin family. (448 aa)
	TBC1D20	TBC1 domain family member 20. (403 aa)
	FAF2	Fas associated factor family member 2. (445 aa)
	RNF213	Ring finger protein 213. (4892 aa)
	PNPLA2	Patatin like phospholipase domain containing 2. (489 aa)
	LOC101961776	Uncharacterized protein. (177 aa)
	DDHD2	DDHD domain containing 2. (701 aa)
	PLIN2	Perilipin; Belongs to the perilipin family. (443 aa)
	BSCL2	BSCL2 lipid droplet biogenesis associated, seipin. (462 aa)
	RAB3GAP1	RAB3 GTPase activating protein catalytic subunit 1. (987 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AUP1	CDS1	ENSSTOP00000000941	ENSSTOP00000008744	AUP1 lipid droplet regulating VLDL assembly factor.	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	0.617
AUP1	CDS2	ENSSTOP00000000941	ENSSTOP00000006029	AUP1 lipid droplet regulating VLDL assembly factor.	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	0.617
AUP1	FAF2	ENSSTOP00000000941	ENSSTOP00000028302	AUP1 lipid droplet regulating VLDL assembly factor.	Fas associated factor family member 2.	0.687
AUP1	SPART	ENSSTOP00000000941	ENSSTOP00000013238	AUP1 lipid droplet regulating VLDL assembly factor.	Spartin.	0.457
BSCL2	SPART	ENSSTOP00000031954	ENSSTOP00000013238	BSCL2 lipid droplet biogenesis associated, seipin.	Spartin.	0.461
BSCL2	TMEM159	ENSSTOP00000031954	ENSSTOP00000006429	BSCL2 lipid droplet biogenesis associated, seipin.	Transmembrane protein 159.	0.418
CDS1	AUP1	ENSSTOP00000008744	ENSSTOP00000000941	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	AUP1 lipid droplet regulating VLDL assembly factor.	0.617
CDS1	CDS2	ENSSTOP00000008744	ENSSTOP00000006029	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	0.898
CDS1	DDHD2	ENSSTOP00000008744	ENSSTOP00000024682	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	DDHD domain containing 2.	0.539
CDS1	SQLE	ENSSTOP00000008744	ENSSTOP00000007571	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	Squalene epoxidase.	0.634
CDS2	AUP1	ENSSTOP00000006029	ENSSTOP00000000941	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	AUP1 lipid droplet regulating VLDL assembly factor.	0.617
CDS2	CDS1	ENSSTOP00000006029	ENSSTOP00000008744	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	0.898
CDS2	DDHD2	ENSSTOP00000006029	ENSSTOP00000024682	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	DDHD domain containing 2.	0.539
CDS2	SQLE	ENSSTOP00000006029	ENSSTOP00000007571	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	Squalene epoxidase.	0.634
CIDEC	PLIN2	ENSSTOP00000001902	ENSSTOP00000032548	Cell death inducing DFFA like effector c.	Perilipin; Belongs to the perilipin family.	0.454
CIDEC	PLIN3	ENSSTOP00000001902	ENSSTOP00000019914	Cell death inducing DFFA like effector c.	Perilipin; Belongs to the perilipin family.	0.521
DDHD2	CDS1	ENSSTOP00000024682	ENSSTOP00000008744	DDHD domain containing 2.	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	0.539
DDHD2	CDS2	ENSSTOP00000024682	ENSSTOP00000006029	DDHD domain containing 2.	Phosphatidate cytidylyltransferase; Provides CDP-diacylglycerol, an important precursor for the synthesis of phosphatidylinositol, phosphatidylglycerol, and cardiolipin.	0.539
DDHD2	PLIN2	ENSSTOP00000024682	ENSSTOP00000032548	DDHD domain containing 2.	Perilipin; Belongs to the perilipin family.	0.408
DDHD2	SPART	ENSSTOP00000024682	ENSSTOP00000013238	DDHD domain containing 2.	Spartin.	0.414