(16 nodes) Suppression of viral release by host network (Ictidomys tridecemlineatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRIM25	Tripartite motif containing 25. (644 aa)
	TRIM21	Tripartite motif containing 21. (477 aa)
	MARCHF2	Membrane associated ring-CH-type finger 2. (246 aa)
	TRIM8	Tripartite motif containing 8. (551 aa)
	TRIM26	Tripartite motif containing 26. (544 aa)
	PML	Promyelocytic leukemia. (877 aa)
	I3MMH2_ICTTR	B box-type domain-containing protein. (150 aa)
	TRIM35	Tripartite motif containing 35. (493 aa)
	TRIM32	Tripartite motif containing 32. (658 aa)
	TRIM13	Tripartite motif containing 13. (410 aa)
	TRIM11	Tripartite motif containing 11. (468 aa)
	TRIM28	Tripartite motif containing 28. (835 aa)
	TRIM15	Tripartite motif containing 15. (413 aa)
	TRIM56	Tripartite motif containing 56. (726 aa)
	TRIM27	Tripartite motif containing 27. (513 aa)
	LOC101955567	Uncharacterized protein. (140 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PML	TRIM27	ENSSTOP00000012192	ENSSTOP00000024280	Promyelocytic leukemia.	Tripartite motif containing 27.	0.510
TRIM25	TRIM56	ENSSTOP00000008370	ENSSTOP00000018487	Tripartite motif containing 25.	Tripartite motif containing 56.	0.449
TRIM27	PML	ENSSTOP00000024280	ENSSTOP00000012192	Tripartite motif containing 27.	Promyelocytic leukemia.	0.510
TRIM27	TRIM28	ENSSTOP00000024280	ENSSTOP00000017511	Tripartite motif containing 27.	Tripartite motif containing 28.	0.504
TRIM28	TRIM27	ENSSTOP00000017511	ENSSTOP00000024280	Tripartite motif containing 28.	Tripartite motif containing 27.	0.504
TRIM32	TRIM35	ENSSTOP00000016129	ENSSTOP00000015127	Tripartite motif containing 32.	Tripartite motif containing 35.	0.644
TRIM32	TRIM56	ENSSTOP00000016129	ENSSTOP00000018487	Tripartite motif containing 32.	Tripartite motif containing 56.	0.734
TRIM32	TRIM8	ENSSTOP00000016129	ENSSTOP00000007403	Tripartite motif containing 32.	Tripartite motif containing 8.	0.508
TRIM35	TRIM32	ENSSTOP00000015127	ENSSTOP00000016129	Tripartite motif containing 35.	Tripartite motif containing 32.	0.644
TRIM56	TRIM25	ENSSTOP00000018487	ENSSTOP00000008370	Tripartite motif containing 56.	Tripartite motif containing 25.	0.449
TRIM56	TRIM32	ENSSTOP00000018487	ENSSTOP00000016129	Tripartite motif containing 56.	Tripartite motif containing 32.	0.734
TRIM8	TRIM32	ENSSTOP00000007403	ENSSTOP00000016129	Tripartite motif containing 8.	Tripartite motif containing 32.	0.508