(32 nodes) CCR chemokine receptor binding network (Ictidomys tridecemlineatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CX3CL1	C-X3-C motif chemokine ligand 1. (397 aa)
	LOC101967545	C-C motif chemokine. (93 aa)
	CCL27	C-C motif chemokine ligand 27. (120 aa)
	CCL19	C-C motif chemokine. (135 aa)
	CCL24	C-C motif chemokine. (119 aa)
	STAT3	Signal transducer and activator of transcription. (748 aa)
	CCL1	C-C motif chemokine ligand 1. (94 aa)
	CCL22	C-C motif chemokine. (93 aa)
	CCL11	C-C motif chemokine ligand 11. (97 aa)
	LOC101971590	Beta-defensin; Has antibacterial activity; Belongs to the beta-defensin family. (67 aa)
	LOC101968597	C-C motif chemokine. (92 aa)
	LOC101968303	C-C motif chemokine. (93 aa)
	LOC101970885	SCY domain-containing protein. (113 aa)
	CCL17	C-C motif chemokine ligand 17. (102 aa)
	CCL5	C-C motif chemokine ligand 5. (91 aa)
	CCL21	C-C motif chemokine ligand 21. (133 aa)
	MSMP	Beta-microseminoprotein. (139 aa)
	CCL8	C-C motif chemokine. (98 aa)
	JAK1	Tyrosine-protein kinase. (1142 aa)
	CXCL13	C-X-C motif chemokine. (109 aa)
	ENSSTOP00000024950	AA_TRNA_LIGASE_II domain-containing protein. (509 aa)
	CNIH4	Cornichon family AMPA receptor auxiliary protein 4. (139 aa)
	LOC101966975	C-C motif chemokine. (111 aa)
	CCL26	C-C motif chemokine. (91 aa)
	Ccl14	SCY domain-containing protein. (91 aa)
	ENSSTOP00000028058	Uncharacterized protein. (61 aa)
	ENSSTOP00000029176	Uncharacterized protein. (154 aa)
	CCL20	C-C motif chemokine ligand 20. (97 aa)
	Nars1	AA_TRNA_LIGASE_II domain-containing protein. (559 aa)
	CCL7	C-C motif chemokine ligand 7. (96 aa)
	LOC101972196	Uncharacterized protein. (51 aa)
	ENSSTOP00000032521	Uncharacterized protein. (88 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCL1	CCL17	ENSSTOP00000006614	ENSSTOP00000013559	C-C motif chemokine ligand 1.	C-C motif chemokine ligand 17.	0.638
CCL1	CCL19	ENSSTOP00000006614	ENSSTOP00000002556	C-C motif chemokine ligand 1.	C-C motif chemokine.	0.461
CCL1	CCL20	ENSSTOP00000006614	ENSSTOP00000030380	C-C motif chemokine ligand 1.	C-C motif chemokine ligand 20.	0.512
CCL1	CCL21	ENSSTOP00000006614	ENSSTOP00000018627	C-C motif chemokine ligand 1.	C-C motif chemokine ligand 21.	0.514
CCL1	CCL22	ENSSTOP00000006614	ENSSTOP00000009202	C-C motif chemokine ligand 1.	C-C motif chemokine.	0.511
CCL1	CCL24	ENSSTOP00000006614	ENSSTOP00000004463	C-C motif chemokine ligand 1.	C-C motif chemokine.	0.453
CCL1	CCL27	ENSSTOP00000006614	ENSSTOP00000002550	C-C motif chemokine ligand 1.	C-C motif chemokine ligand 27.	0.617
CCL1	CCL5	ENSSTOP00000006614	ENSSTOP00000014170	C-C motif chemokine ligand 1.	C-C motif chemokine ligand 5.	0.748
CCL1	CX3CL1	ENSSTOP00000006614	ENSSTOP00000023014	C-C motif chemokine ligand 1.	C-X3-C motif chemokine ligand 1.	0.605
CCL1	CXCL13	ENSSTOP00000006614	ENSSTOP00000020283	C-C motif chemokine ligand 1.	C-X-C motif chemokine.	0.607
CCL1	LOC101968303	ENSSTOP00000006614	ENSSTOP00000011933	C-C motif chemokine ligand 1.	C-C motif chemokine.	0.544
CCL1	LOC101968597	ENSSTOP00000006614	ENSSTOP00000011929	C-C motif chemokine ligand 1.	C-C motif chemokine.	0.575
CCL11	CCL17	ENSSTOP00000011390	ENSSTOP00000013559	C-C motif chemokine ligand 11.	C-C motif chemokine ligand 17.	0.408
CCL11	CCL19	ENSSTOP00000011390	ENSSTOP00000002556	C-C motif chemokine ligand 11.	C-C motif chemokine.	0.485
CCL11	CCL22	ENSSTOP00000011390	ENSSTOP00000009202	C-C motif chemokine ligand 11.	C-C motif chemokine.	0.542
CCL11	CCL24	ENSSTOP00000011390	ENSSTOP00000004463	C-C motif chemokine ligand 11.	C-C motif chemokine.	0.855
CCL11	CCL26	ENSSTOP00000011390	ENSSTOP00000025863	C-C motif chemokine ligand 11.	C-C motif chemokine.	0.983
CCL11	CCL27	ENSSTOP00000011390	ENSSTOP00000002550	C-C motif chemokine ligand 11.	C-C motif chemokine ligand 27.	0.982
CCL11	CCL5	ENSSTOP00000011390	ENSSTOP00000014170	C-C motif chemokine ligand 11.	C-C motif chemokine ligand 5.	0.980
CCL11	CCL7	ENSSTOP00000011390	ENSSTOP00000031852	C-C motif chemokine ligand 11.	C-C motif chemokine ligand 7.	0.854