STRINGSTRING
TLR4 TLR4 GRIN2B GRIN2B CACNB3 CACNB3 TRPA1 TRPA1 CXCL12 CXCL12 CXCR4 CXCR4 GRM8 GRM8 FYN FYN CHRNA5 CHRNA5 NTRK1 NTRK1 ITGA2 ITGA2 PAWR PAWR IL18 IL18 SCN1A SCN1A TMEM120A TMEM120A ASIC3 ASIC3 PHF24 PHF24 KCNA1 KCNA1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TLR4Toll like receptor 4; Belongs to the Toll-like receptor family. (840 aa)
GRIN2BGlutamate ionotropic receptor NMDA type subunit 2B. (1484 aa)
CACNB3Calcium voltage-gated channel auxiliary subunit beta 3. (484 aa)
TRPA1Transient receptor potential cation channel subfamily A member 1. (1044 aa)
CXCL12C-X-C motif chemokine ligand 12; Belongs to the intercrine alpha (chemokine CxC) family. (119 aa)
CXCR4C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family. (352 aa)
GRM8Glutamate metabotropic receptor 8. (908 aa)
FYNTyrosine-protein kinase. (537 aa)
CHRNA5Cholinergic receptor nicotinic alpha 5 subunit. (468 aa)
NTRK1Tyrosine-protein kinase receptor. (799 aa)
ITGA2Integrin subunit alpha 2; Belongs to the integrin alpha chain family. (1183 aa)
PAWRPro-apoptotic WT1 regulator. (340 aa)
IL18Interleukin-18; A proinflammatory cytokine primarily involved in polarized T- helper 1 (Th1) cell and natural killer (NK) cell immune responses. Upon binding to IL18R1 and IL18RAP, forms a signaling ternary complex which activates NF-kappa-B, triggering synthesis of inflammatory mediators. Synergizes with IL12/interleukin-12 to induce IFNG synthesis from T- helper 1 (Th1) cells and natural killer (NK) cells. Belongs to the IL-1 family. (193 aa)
SCN1ASodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1998 aa)
TMEM120ATransmembrane protein 120A. (342 aa)
ASIC3Acid sensing ion channel subunit 3; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family. (533 aa)
PHF24PHD finger protein 24. (400 aa)
KCNA1Potassium voltage-gated channel subfamily A member 1; Belongs to the potassium channel family. (476 aa)
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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