STRINGSTRING
PRDM12 PRDM12 Brca1 Brca1 LMNA LMNA DMRTC2 DMRTC2 MYB MYB JARID2 JARID2 SUV39H1 SUV39H1 GFI1B GFI1B SIRT1 SIRT1 RIF1 RIF1 Znf304 Znf304 MECP2 MECP2 ENSSTOP00000027930 ENSSTOP00000027930
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PRDM12PR domain zinc finger protein 12; Involved in the positive regulation of histone H3-K9 dimethylation; Belongs to the class V-like SAM-binding methyltransferase superfamily. (382 aa)
Brca1Uncharacterized protein. (353 aa)
LMNALamin A/C; Belongs to the intermediate filament family. (665 aa)
DMRTC2DMRT like family C2. (371 aa)
MYBMYB proto-oncogene, transcription factor. (753 aa)
JARID2Jumonji and AT-rich interaction domain containing 2. (1226 aa)
SUV39H1Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (412 aa)
GFI1BGrowth factor independent 1B transcriptional repressor. (360 aa)
SIRT1Sirtuin 1. (602 aa)
RIF1Replication timing regulatory factor 1. (2480 aa)
Znf304Zinc finger protein 304. (616 aa)
MECP2Methyl-CpG-binding protein 2; Chromosomal protein that binds to methylated DNA. It can bind specifically to a single methyl-CpG pair. It is not influenced by sequences flanking the methyl-CpGs. Binds both 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC)-containing DNA, with a preference for 5-methylcytosine (5mC). (486 aa)
ENSSTOP00000027930Uncharacterized protein. (173 aa)
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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