STRINGSTRING
ACAT1 ACAT1 Pkd2 Pkd2 LAMB2 LAMB2 UMOD UMOD LGR4 LGR4 PAX8 PAX8 HES5 HES5 SOX9 SOX9 HES1 HES1 PDGFB PDGFB Aqp1 Aqp1 OSR1 OSR1 NPHS2 NPHS2 PKD1 PKD1 PAX2 PAX2 CALB1 CALB1 SOX8 SOX8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACAT1Acetyl-CoA acetyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family. (427 aa)
Pkd2EF-hand domain-containing protein. (892 aa)
LAMB2Laminin subunit beta 2. (1846 aa)
UMODUromodulin. (671 aa)
LGR4Leucine rich repeat containing G protein-coupled receptor 4. (927 aa)
PAX8Paired box 8. (574 aa)
HES5Hes family bHLH transcription factor 5. (141 aa)
SOX9SRY-box transcription factor 9. (509 aa)
HES1Hes family bHLH transcription factor 1. (280 aa)
PDGFBPlatelet derived growth factor subunit B; Belongs to the PDGF/VEGF growth factor family. (211 aa)
Aqp1Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (269 aa)
OSR1Odd-skipped related transcription factor 1. (266 aa)
NPHS2NPHS2 stomatin family member, podocin. (382 aa)
PKD1Polycystin 1, transient receptor potential channel interacting. (4252 aa)
PAX2Paired box 2. (417 aa)
CALB1Calbindin 1. (261 aa)
SOX8SRY-box transcription factor 8. (466 aa)
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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