STRINGSTRING
VCP VCP NOP53 NOP53 ZC3H12A ZC3H12A OTUD4 OTUD4 SART3 SART3 TRIM21 TRIM21 UBXN1 UBXN1 TNIP1 TNIP1 DMWD DMWD WDR20 WDR20 TANK TANK ITCH ITCH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VCPValosin containing protein; Belongs to the AAA ATPase family. (806 aa)
NOP53Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (477 aa)
ZC3H12AZinc finger CCCH-type containing 12A. (599 aa)
OTUD4OTU deubiquitinase 4. (1047 aa)
SART3Spliceosome associated factor 3, U4/U6 recycling protein. (963 aa)
TRIM21Tripartite motif containing 21. (477 aa)
UBXN1UBX domain protein 1. (297 aa)
TNIP1TNFAIP3 interacting protein 1. (636 aa)
DMWDDM1 locus, WD repeat containing. (685 aa)
WDR20WD repeat domain 20. (581 aa)
TANKTRAF family member associated NFKB activator. (439 aa)
ITCHE3 ubiquitin-protein ligase. (855 aa)
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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