30 items (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TANC2	Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2. (1989 aa)
	BCR	BCR activator of RhoGEF and GTPase. (1283 aa)
	PRR7	Proline rich 7, synaptic. (269 aa)
	FYN	Tyrosine-protein kinase. (537 aa)
	ACTN2	Actinin alpha 2. (894 aa)
	NR3C2	Nuclear receptor subfamily 3 group C member 2. (985 aa)
	TNIK	TRAF2 and NCK interacting kinase. (1360 aa)
	DLGAP1	DLG associated protein 1. (979 aa)
	GPHN	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released. (769 aa)
	ARHGEF2	Rho/Rac guanine nucleotide exchange factor 2. (869 aa)
	DLG3	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family. (867 aa)
	NOS1	Nitric oxide synthase; Produces nitric oxide (NO). (1329 aa)
	IQSEC1	IQ motif and Sec7 domain 1. (941 aa)
	SHANK3	SH3 and multiple ankyrin repeat domains 3. (1645 aa)
	BAIAP2	BAI1 associated protein 2. (535 aa)
	SYNGAP1	Synaptic Ras GTPase activating protein 1. (1336 aa)
	CDKL5	Cyclin dependent kinase like 5. (960 aa)
	SH3GL3	SH3 domain containing GRB2 like 3, endophilin A3. (346 aa)
	ANKS1B	Ankyrin repeat and sterile alpha motif domain containing 1B. (1260 aa)
	TANC1	Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1. (1861 aa)
	SH3GL1	SH3 domain containing GRB2 like 1, endophilin A2. (368 aa)
	CTNND1	Catenin delta 1. (967 aa)
	ABR	ABR activator of RhoGEF and GTPase. (871 aa)
	SNX1	Sorting nexin 1. (529 aa)
	DNM2	Dynamin 2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (870 aa)
	LYN	Tyrosine-protein kinase. (512 aa)
	IQSEC2	IQ motif and Sec7 domain 2. (1488 aa)
	PSD	Pleckstrin and Sec7 domain containing. (1026 aa)
	SRC	Tyrosine-protein kinase. (541 aa)
	CTNNB1	Catenin beta 1. (781 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN2	BAIAP2	ENSSTOP00000006587	ENSSTOP00000032221	Actinin alpha 2.	BAI1 associated protein 2.	0.503
ACTN2	DLG3	ENSSTOP00000006587	ENSSTOP00000024267	Actinin alpha 2.	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	0.515
ACTN2	SHANK3	ENSSTOP00000006587	ENSSTOP00000019809	Actinin alpha 2.	SH3 and multiple ankyrin repeat domains 3.	0.401
ANKS1B	DLGAP1	ENSSTOP00000010975	ENSSTOP00000001547	Ankyrin repeat and sterile alpha motif domain containing 1B.	DLG associated protein 1.	0.423
ANKS1B	SYNGAP1	ENSSTOP00000010975	ENSSTOP00000032329	Ankyrin repeat and sterile alpha motif domain containing 1B.	Synaptic Ras GTPase activating protein 1.	0.463
BAIAP2	ACTN2	ENSSTOP00000032221	ENSSTOP00000006587	BAI1 associated protein 2.	Actinin alpha 2.	0.503
BAIAP2	DLG3	ENSSTOP00000032221	ENSSTOP00000024267	BAI1 associated protein 2.	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	0.512
BAIAP2	FYN	ENSSTOP00000032221	ENSSTOP00000006598	BAI1 associated protein 2.	Tyrosine-protein kinase.	0.491
BAIAP2	IQSEC2	ENSSTOP00000032221	ENSSTOP00000032166	BAI1 associated protein 2.	IQ motif and Sec7 domain 2.	0.547
BAIAP2	LYN	ENSSTOP00000032221	ENSSTOP00000029495	BAI1 associated protein 2.	Tyrosine-protein kinase.	0.569
BAIAP2	SHANK3	ENSSTOP00000032221	ENSSTOP00000019809	BAI1 associated protein 2.	SH3 and multiple ankyrin repeat domains 3.	0.656
BAIAP2	SRC	ENSSTOP00000032221	ENSSTOP00000014871	BAI1 associated protein 2.	Tyrosine-protein kinase.	0.724
BAIAP2	SYNGAP1	ENSSTOP00000032221	ENSSTOP00000032329	BAI1 associated protein 2.	Synaptic Ras GTPase activating protein 1.	0.537
CTNNB1	CTNND1	ENSSTOP00000014441	ENSSTOP00000027035	Catenin beta 1.	Catenin delta 1.	0.986
CTNNB1	FYN	ENSSTOP00000014441	ENSSTOP00000006598	Catenin beta 1.	Tyrosine-protein kinase.	0.920
CTNNB1	GPHN	ENSSTOP00000014441	ENSSTOP00000001373	Catenin beta 1.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.548
CTNNB1	LYN	ENSSTOP00000014441	ENSSTOP00000029495	Catenin beta 1.	Tyrosine-protein kinase.	0.775
CTNNB1	SRC	ENSSTOP00000014441	ENSSTOP00000014871	Catenin beta 1.	Tyrosine-protein kinase.	0.939
CTNNB1	TNIK	ENSSTOP00000014441	ENSSTOP00000002503	Catenin beta 1.	TRAF2 and NCK interacting kinase.	0.566
CTNND1	CTNNB1	ENSSTOP00000027035	ENSSTOP00000014441	Catenin delta 1.	Catenin beta 1.	0.986