STRINGSTRING
PES1 PES1 WDR36 WDR36 BMS1 BMS1 PIN4 PIN4 NOL6 NOL6 UTP6 UTP6 UTP20 UTP20 CMSS1 CMSS1 FAM207A FAM207A UTP3 UTP3 HUNK HUNK MRTO4 MRTO4 NOC4L NOC4L IMP3 IMP3 ENSSTOP00000026589 ENSSTOP00000026589 UTP18 UTP18 FBLL1 FBLL1 RRP36 RRP36 RIOK1 RIOK1 Utp14a Utp14a FCF1 FCF1 NSA2 NSA2 MAK16 MAK16 RIOK2 RIOK2 RIOK3 RIOK3 NOP58 NOP58 NOL10 NOL10 MPHOSPH10 MPHOSPH10 KRR1 KRR1 WDR3 WDR3 IMP4 IMP4 RRP7A RRP7A RRP9 RRP9 NOP9 NOP9 UTP23 UTP23 RRP15 RRP15 NOB1 NOB1 EMG1 EMG1 BOP1 BOP1 RSL24D1 RSL24D1 WDR12 WDR12 Ltv1 Ltv1 Pwp2 Pwp2 PRKDC PRKDC NOC2L NOC2L RRP1 RRP1 NOP14 NOP14 FBL FBL NOP56 NOP56
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PES1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family. (585 aa)
WDR36WD repeat domain 36. (1014 aa)
BMS1BMS1 ribosome biogenesis factor. (1280 aa)
PIN4Peptidyl-prolyl cis-trans isomerase. (129 aa)
NOL6Nucleolar protein 6. (1154 aa)
UTP6UTP6 small subunit processome component. (597 aa)
UTP20UTP20 small subunit processome component. (2790 aa)
CMSS1Cms1 ribosomal small subunit homolog. (278 aa)
FAM207AFamily with sequence similarity 207 member A. (175 aa)
UTP3UTP3 small subunit processome component. (473 aa)
HUNKHormonally up-regulated Neu-associated kinase. (715 aa)
MRTO4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (239 aa)
NOC4LNucleolar complex associated 4 homolog. (515 aa)
IMP3IMP U3 small nucleolar ribonucleoprotein 3. (184 aa)
ENSSTOP00000026589Uncharacterized protein. (154 aa)
UTP18UTP18 small subunit processome component. (555 aa)
FBLL1Fibrillarin like 1. (209 aa)
RRP36Ribosomal RNA processing 36. (235 aa)
RIOK1Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (569 aa)
Utp14aUncharacterized protein. (771 aa)
FCF1PINc domain-containing protein. (199 aa)
NSA2Uncharacterized protein. (171 aa)
MAK16Protein MAK16 homolog; Belongs to the MAK16 family. (298 aa)
RIOK2RIO kinase 2. (550 aa)
RIOK3Serine/threonine-protein kinase RIO3; Involved in regulation of type I interferon (IFN)-dependent immune response which plays a critical role in the innate immune response against DNA and RNA viruses. (519 aa)
NOP58NOP58 ribonucleoprotein. (530 aa)
NOL10Nucleolar protein 10. (685 aa)
MPHOSPH10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (679 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (381 aa)
WDR3WD repeat domain 3. (943 aa)
IMP4IMP U3 small nucleolar ribonucleoprotein 4. (299 aa)
RRP7ARibosomal RNA processing 7 homolog A. (280 aa)
RRP9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (475 aa)
NOP9NOP9 nucleolar protein. (642 aa)
UTP23UTP23 small subunit processome component. (248 aa)
RRP15Ribosomal RNA processing 15 homolog. (283 aa)
NOB1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (405 aa)
EMG1EMG1 N1-specific pseudouridine methyltransferase. (244 aa)
BOP1Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (743 aa)
RSL24D1Ribosomal L24 domain containing 1. (163 aa)
WDR12Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
Ltv1LTV1 ribosome biogenesis factor. (474 aa)
Pwp2Uncharacterized protein. (923 aa)
PRKDCProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4130 aa)
NOC2LNOC2 like nucleolar associated transcriptional repressor. (667 aa)
RRP1Ribosomal RNA processing 1. (422 aa)
NOP14NOP14 nucleolar protein. (860 aa)
FBLFibrillarin. (322 aa)
NOP56NOP56 ribonucleoprotein. (595 aa)
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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