(56 nodes) B-box-type zinc finger network (Ictidomys tridecemlineatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRIM24	Tripartite motif containing 24. (996 aa)
	TRIM29	Tripartite motif containing 29. (583 aa)
	TRIM10	Tripartite motif containing 10. (485 aa)
	TRIM40	Tripartite motif containing 40. (249 aa)
	TRIM39	Tripartite motif containing 39. (488 aa)
	TRIM66	Tripartite motif containing 66. (1361 aa)
	LOC101958204	Uncharacterized protein. (472 aa)
	TRIM3	Tripartite motif containing 3. (744 aa)
	ZBBX	Zinc finger B-box domain containing. (717 aa)
	TRIM6	Tripartite motif containing 6. (469 aa)
	TRIM42	Tripartite motif containing 42. (727 aa)
	TRIM44	Tripartite motif containing 44. (343 aa)
	TRIM15	Tripartite motif containing 15. (413 aa)
	LOC101955511	Uncharacterized protein. (626 aa)
	TRIM28	Tripartite motif containing 28. (835 aa)
	TRIM11	Tripartite motif containing 11. (468 aa)
	RNF207	Ring finger protein 207. (631 aa)
	TRIM13	Tripartite motif containing 13. (410 aa)
	TRIM32	Tripartite motif containing 32. (658 aa)
	TRIM35	Tripartite motif containing 35. (493 aa)
	TRIM14	Tripartite motif containing 14. (445 aa)
	TRIML2	Tripartite motif family like 2. (415 aa)
	TRIM38	Tripartite motif containing 38. (475 aa)
	TRIM71	Tripartite motif containing 71. (868 aa)
	I3MMH2_ICTTR	B box-type domain-containing protein. (150 aa)
	TRIM68	Tripartite motif containing 68. (485 aa)
	PML	Promyelocytic leukemia. (877 aa)
	TRIM72	Tripartite motif containing 72. (477 aa)
	I3MKE3_ICTTR	Uncharacterized protein. (721 aa)
	TRIM37	Tripartite motif containing 37. (965 aa)
	TRIM9	Tripartite motif containing 9. (788 aa)
	TRIM54	Tripartite motif containing 54. (364 aa)
	TRIM50	Tripartite motif containing 50. (573 aa)
	TRIM26	Tripartite motif containing 26. (544 aa)
	TRIM46	Tripartite motif containing 46. (759 aa)
	TRIM17	Tripartite motif containing 17. (477 aa)
	TRIM45	Tripartite motif containing 45. (580 aa)
	TRIM55	Tripartite motif containing 55. (545 aa)
	TRIM41	Uncharacterized protein. (628 aa)
	TRIM23	Tripartite motif containing 23. (574 aa)
	TRIM2	Tripartite motif containing 2. (788 aa)
	MID2	Midline 2. (705 aa)
	LOC101965602	Uncharacterized protein. (424 aa)
	MID1	Midline 1. (667 aa)
	TRIM33	Tripartite motif containing 33. (1028 aa)
	LOC101955567	Uncharacterized protein. (140 aa)
	TRIM27	Tripartite motif containing 27. (513 aa)
	TRIM7	Tripartite motif containing 7. (510 aa)
	TRIM67	Tripartite motif containing 67. (770 aa)
	TRIM63	Tripartite motif containing 63. (354 aa)
	Trim59	Uncharacterized protein. (403 aa)
	TRIM21	Tripartite motif containing 21. (477 aa)
	TRIM36	Tripartite motif containing 36. (728 aa)
	TRIM62	Tripartite motif containing 62. (475 aa)
	Trim16	Uncharacterized protein. (558 aa)
	TRIM56	Tripartite motif containing 56. (726 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101958204	TRIM36	ENSSTOP00000023546	ENSSTOP00000002368	Uncharacterized protein.	Tripartite motif containing 36.	0.412
PML	TRIM27	ENSSTOP00000012192	ENSSTOP00000024280	Promyelocytic leukemia.	Tripartite motif containing 27.	0.510
RNF207	TRIM40	ENSSTOP00000017179	ENSSTOP00000001741	Ring finger protein 207.	Tripartite motif containing 40.	0.410
RNF207	TRIM54	ENSSTOP00000017179	ENSSTOP00000010178	Ring finger protein 207.	Tripartite motif containing 54.	0.408
TRIM10	TRIM44	ENSSTOP00000001746	ENSSTOP00000019504	Tripartite motif containing 10.	Tripartite motif containing 44.	0.419
TRIM11	TRIM44	ENSSTOP00000017307	ENSSTOP00000019504	Tripartite motif containing 11.	Tripartite motif containing 44.	0.675
TRIM11	TRIM66	ENSSTOP00000017307	ENSSTOP00000001081	Tripartite motif containing 11.	Tripartite motif containing 66.	0.602
TRIM14	TRIM38	ENSSTOP00000014964	ENSSTOP00000014164	Tripartite motif containing 14.	Tripartite motif containing 38.	0.506
TRIM14	TRIM9	ENSSTOP00000014964	ENSSTOP00000010756	Tripartite motif containing 14.	Tripartite motif containing 9.	0.447
TRIM15	TRIM23	ENSSTOP00000018246	ENSSTOP00000030745	Tripartite motif containing 15.	Tripartite motif containing 23.	0.458
TRIM15	TRIM33	ENSSTOP00000018246	ENSSTOP00000025975	Tripartite motif containing 15.	Tripartite motif containing 33.	0.408
TRIM15	TRIML2	ENSSTOP00000018246	ENSSTOP00000014612	Tripartite motif containing 15.	Tripartite motif family like 2.	0.420
TRIM17	TRIM24	ENSSTOP00000006751	ENSSTOP00000002659	Tripartite motif containing 17.	Tripartite motif containing 24.	0.524
TRIM17	TRIM28	ENSSTOP00000006751	ENSSTOP00000017511	Tripartite motif containing 17.	Tripartite motif containing 28.	0.559
TRIM17	TRIM33	ENSSTOP00000006751	ENSSTOP00000025975	Tripartite motif containing 17.	Tripartite motif containing 33.	0.454
TRIM17	TRIM44	ENSSTOP00000006751	ENSSTOP00000019504	Tripartite motif containing 17.	Tripartite motif containing 44.	0.483
TRIM17	TRIM66	ENSSTOP00000006751	ENSSTOP00000001081	Tripartite motif containing 17.	Tripartite motif containing 66.	0.412
TRIM17	TRIM67	ENSSTOP00000006751	ENSSTOP00000005128	Tripartite motif containing 17.	Tripartite motif containing 67.	0.407
TRIM17	TRIM9	ENSSTOP00000006751	ENSSTOP00000010756	Tripartite motif containing 17.	Tripartite motif containing 9.	0.412
TRIM2	TRIM3	ENSSTOP00000028758	ENSSTOP00000023064	Tripartite motif containing 2.	Tripartite motif containing 3.	0.570