9 items (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UBFD1	Ubiquitin family domain containing 1. (301 aa)
	USP14	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family. (500 aa)
	UBA52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (232 aa)
	FAU	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	UBL4A	Ubiquitin like 4A. (157 aa)
	NEDD8	NEDD8 ubiquitin like modifier. (81 aa)
	LOC101966763	Ubiquitin-like domain-containing protein. (156 aa)
	Rps27a	Ubiquitin-like domain-containing protein. (156 aa)
	BAG6	BCL2 associated athanogene 6. (1162 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAG6	FAU	ENSSTOP00000024218	ENSSTOP00000002981	BCL2 associated athanogene 6.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.796
BAG6	LOC101966763	ENSSTOP00000024218	ENSSTOP00000019666	BCL2 associated athanogene 6.	Ubiquitin-like domain-containing protein.	0.505
BAG6	NEDD8	ENSSTOP00000024218	ENSSTOP00000020023	BCL2 associated athanogene 6.	NEDD8 ubiquitin like modifier.	0.505
BAG6	Rps27a	ENSSTOP00000024218	ENSSTOP00000008580	BCL2 associated athanogene 6.	Ubiquitin-like domain-containing protein.	0.505
BAG6	UBL4A	ENSSTOP00000024218	ENSSTOP00000022871	BCL2 associated athanogene 6.	Ubiquitin like 4A.	0.989
FAU	BAG6	ENSSTOP00000002981	ENSSTOP00000024218	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	BCL2 associated athanogene 6.	0.796
FAU	LOC101966763	ENSSTOP00000002981	ENSSTOP00000019666	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.999
FAU	NEDD8	ENSSTOP00000002981	ENSSTOP00000020023	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	NEDD8 ubiquitin like modifier.	0.924
FAU	Rps27a	ENSSTOP00000002981	ENSSTOP00000008580	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.999
FAU	UBA52	ENSSTOP00000002981	ENSSTOP00000004191	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
FAU	UBFD1	ENSSTOP00000002981	ENSSTOP00000018310	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin family domain containing 1.	0.774
FAU	UBL4A	ENSSTOP00000002981	ENSSTOP00000022871	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin like 4A.	0.913
FAU	USP14	ENSSTOP00000002981	ENSSTOP00000005775	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.774
LOC101966763	BAG6	ENSSTOP00000019666	ENSSTOP00000024218	Ubiquitin-like domain-containing protein.	BCL2 associated athanogene 6.	0.505
LOC101966763	FAU	ENSSTOP00000019666	ENSSTOP00000002981	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
LOC101966763	NEDD8	ENSSTOP00000019666	ENSSTOP00000020023	Ubiquitin-like domain-containing protein.	NEDD8 ubiquitin like modifier.	0.947
LOC101966763	UBA52	ENSSTOP00000019666	ENSSTOP00000004191	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.985
LOC101966763	UBFD1	ENSSTOP00000019666	ENSSTOP00000018310	Ubiquitin-like domain-containing protein.	Ubiquitin family domain containing 1.	0.832
LOC101966763	UBL4A	ENSSTOP00000019666	ENSSTOP00000022871	Ubiquitin-like domain-containing protein.	Ubiquitin like 4A.	0.854
LOC101966763	USP14	ENSSTOP00000019666	ENSSTOP00000005775	Ubiquitin-like domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.957