50 items (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Sgk1	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (454 aa)
	SH3PXD2B	SH3 and PX domains 2B. (879 aa)
	SNX19	Sorting nexin 19. (997 aa)
	SNX2	Sorting nexin 2. (523 aa)
	SNX6	Sorting nexin 6. (341 aa)
	SNX20	Sorting nexin 20. (318 aa)
	SNX14	Sorting nexin 14. (966 aa)
	SNX12	Sorting nexin 12. (163 aa)
	SNX1	Sorting nexin 1. (529 aa)
	HS1BP3	HCLS1 binding protein 3. (360 aa)
	PIK3C2B	Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta; Belongs to the PI3/PI4-kinase family. (1617 aa)
	SNX15	Sorting nexin 15. (341 aa)
	SNX11	Sorting nexin 11. (270 aa)
	SNX27	Sorting nexin 27. (542 aa)
	LOC101971017	PX domain-containing protein. (498 aa)
	SGK3	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (496 aa)
	SNX13	Sorting nexin 13. (1153 aa)
	RPS6KC1	Ribosomal protein S6 kinase C1. (1067 aa)
	ARHGAP32	Rho GTPase activating protein 32. (2102 aa)
	PXDC1	PX domain containing 1. (231 aa)
	SNX7	Sorting nexin 7. (408 aa)
	ZCCHC14	Zinc finger CCHC-type containing 14. (917 aa)
	SNX24	Sorting nexin 24. (149 aa)
	NCF1	Neutrophil cytosolic factor 1. (405 aa)
	SNX21	Sorting nexin family member 21. (364 aa)
	SNX3	Sorting nexin 3. (162 aa)
	PIK3C2A	Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha; Belongs to the PI3/PI4-kinase family. (1641 aa)
	PLD1	Phospholipase. (1037 aa)
	SNX9	Sorting nexin. (610 aa)
	SNX17	Sorting nexin 17. (470 aa)
	SNX33	Sorting nexin. (573 aa)
	SNX25	Sorting nexin 25. (985 aa)
	Ncf4	Neutrophil cytosolic factor 4. (294 aa)
	PIK3C2G	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1021 aa)
	SNX31	Sorting nexin 31. (440 aa)
	SNX5	Sorting nexin; Involved in several stages of intracellular trafficking. (394 aa)
	PXK	PX domain containing serine/threonine kinase like. (545 aa)
	SNX30	Sorting nexin family member 30. (437 aa)
	Nisch	PX domain-containing protein. (1543 aa)
	PLD2	Phospholipase. (933 aa)
	NOXO1	NADPH oxidase organizer 1. (346 aa)
	SNX10	Sorting nexin 10. (201 aa)
	SNX16	Sorting nexin 16. (344 aa)
	SH3PXD2A	SH3 and PX domains 2A. (1106 aa)
	SNX29	Sorting nexin 29. (812 aa)
	Snx18	Sorting nexin. (618 aa)
	SNX8	Sorting nexin 8. (455 aa)
	SNX22	Sorting nexin 22. (193 aa)
	ZCCHC2	Zinc finger CCHC-type containing 2. (916 aa)
	ARHGAP33	Rho GTPase activating protein 33. (1289 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HS1BP3	SNX10	ENSSTOP00000004467	ENSSTOP00000017986	HCLS1 binding protein 3.	Sorting nexin 10.	0.579
HS1BP3	SNX21	ENSSTOP00000004467	ENSSTOP00000005827	HCLS1 binding protein 3.	Sorting nexin family member 21.	0.408
LOC101971017	PIK3C2A	ENSSTOP00000032462	ENSSTOP00000008272	PX domain-containing protein.	Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha; Belongs to the PI3/PI4-kinase family.	0.806
LOC101971017	PIK3C2B	ENSSTOP00000032462	ENSSTOP00000003734	PX domain-containing protein.	Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta; Belongs to the PI3/PI4-kinase family.	0.806
LOC101971017	PIK3C2G	ENSSTOP00000032462	ENSSTOP00000020519	PX domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.806
LOC101971017	SNX1	ENSSTOP00000032462	ENSSTOP00000028729	PX domain-containing protein.	Sorting nexin 1.	0.657
LOC101971017	SNX15	ENSSTOP00000032462	ENSSTOP00000030585	PX domain-containing protein.	Sorting nexin 15.	0.441
LOC101971017	SNX2	ENSSTOP00000032462	ENSSTOP00000025309	PX domain-containing protein.	Sorting nexin 2.	0.657
LOC101971017	SNX30	ENSSTOP00000032462	ENSSTOP00000000390	PX domain-containing protein.	Sorting nexin family member 30.	0.517
LOC101971017	SNX33	ENSSTOP00000032462	ENSSTOP00000011179	PX domain-containing protein.	Sorting nexin.	0.805
LOC101971017	SNX5	ENSSTOP00000032462	ENSSTOP00000013809	PX domain-containing protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.631
LOC101971017	SNX6	ENSSTOP00000032462	ENSSTOP00000026387	PX domain-containing protein.	Sorting nexin 6.	0.631
LOC101971017	SNX7	ENSSTOP00000032462	ENSSTOP00000016563	PX domain-containing protein.	Sorting nexin 7.	0.517
LOC101971017	SNX8	ENSSTOP00000032462	ENSSTOP00000020020	PX domain-containing protein.	Sorting nexin 8.	0.585
LOC101971017	SNX9	ENSSTOP00000032462	ENSSTOP00000009537	PX domain-containing protein.	Sorting nexin.	0.870
NCF1	NOXO1	ENSSTOP00000005735	ENSSTOP00000017600	Neutrophil cytosolic factor 1.	NADPH oxidase organizer 1.	0.738
NCF1	Ncf4	ENSSTOP00000005735	ENSSTOP00000016469	Neutrophil cytosolic factor 1.	Neutrophil cytosolic factor 4.	0.998
NOXO1	NCF1	ENSSTOP00000017600	ENSSTOP00000005735	NADPH oxidase organizer 1.	Neutrophil cytosolic factor 1.	0.738
NOXO1	Ncf4	ENSSTOP00000017600	ENSSTOP00000016469	NADPH oxidase organizer 1.	Neutrophil cytosolic factor 4.	0.739
Ncf4	NCF1	ENSSTOP00000016469	ENSSTOP00000005735	Neutrophil cytosolic factor 4.	Neutrophil cytosolic factor 1.	0.998