40 items (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPA2	Replication protein A2. (271 aa)
	RFC3	Replication factor C subunit 3. (339 aa)
	Pold3	Uncharacterized protein. (467 aa)
	POLD2	DNA polymerase delta 2, accessory subunit. (469 aa)
	CUL4A	Cullin 4A; Belongs to the cullin family. (671 aa)
	UBA52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (232 aa)
	RAD18	Uncharacterized protein. (310 aa)
	USP1	Ubiquitin specific peptidase 1; Belongs to the peptidase C19 family. (719 aa)
	POLE2	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (504 aa)
	RFC1	Replication factor C subunit 1. (1118 aa)
	DDB1	Damage specific DNA binding protein 1. (1140 aa)
	Rps27a	Ubiquitin-like domain-containing protein. (156 aa)
	POLD1	DNA polymerase. (1106 aa)
	Rfc4	AAA domain-containing protein. (364 aa)
	DTL	Denticleless E3 ubiquitin protein ligase homolog. (730 aa)
	RCBTB2	RCC1 and BTB domain containing protein 2. (551 aa)
	Rbx1	RING-type domain-containing protein. (108 aa)
	Pold4	Uncharacterized protein. (107 aa)
	ATAD5	ATPase family AAA domain containing 5. (1897 aa)
	I3MU87_ICTTR	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (250 aa)
	I3MUA8_ICTTR	AAA domain-containing protein. (312 aa)
	POLE	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2282 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (592 aa)
	WDR48	WD repeat domain 48. (677 aa)
	CUL4B	Cullin 4B; Belongs to the cullin family. (970 aa)
	RFC2	Replication factor C subunit 2. (321 aa)
	I3N110_ICTTR	RING-type domain-containing protein. (147 aa)
	LOC101966763	Ubiquitin-like domain-containing protein. (156 aa)
	Pole3	CBFD_NFYB_HMF domain-containing protein. (147 aa)
	MEIOB	Meiosis specific with OB-fold. (471 aa)
	Pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
	Rfc5	AAA domain-containing protein. (340 aa)
	ENSSTOP00000025372	CBFD_NFYB_HMF domain-containing protein. (134 aa)
	POLE4	DNA polymerase epsilon 4, accessory subunit. (115 aa)
	RCBTB1	RCC1 and BTB domain containing protein 1. (531 aa)
	RPA3	Replication protein A3. (121 aa)
	ENSSTOP00000028703	Ubiquitin-like domain-containing protein. (122 aa)
	ENSSTOP00000028717	RING-type domain-containing protein. (95 aa)
	ENSSTOP00000029771	AAA domain-containing protein. (336 aa)
	ENSSTOP00000031366	Ubiquitin-like domain-containing protein. (95 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATAD5	CUL4A	ENSSTOP00000015615	ENSSTOP00000003536	ATPase family AAA domain containing 5.	Cullin 4A; Belongs to the cullin family.	0.620
ATAD5	CUL4B	ENSSTOP00000015615	ENSSTOP00000016861	ATPase family AAA domain containing 5.	Cullin 4B; Belongs to the cullin family.	0.620
ATAD5	DDB1	ENSSTOP00000015615	ENSSTOP00000006801	ATPase family AAA domain containing 5.	Damage specific DNA binding protein 1.	0.695
ATAD5	DTL	ENSSTOP00000015615	ENSSTOP00000012151	ATPase family AAA domain containing 5.	Denticleless E3 ubiquitin protein ligase homolog.	0.887
ATAD5	ENSSTOP00000025372	ENSSTOP00000015615	ENSSTOP00000025372	ATPase family AAA domain containing 5.	CBFD_NFYB_HMF domain-containing protein.	0.769
ATAD5	ENSSTOP00000029771	ENSSTOP00000015615	ENSSTOP00000029771	ATPase family AAA domain containing 5.	AAA domain-containing protein.	0.985
ATAD5	ENSSTOP00000031366	ENSSTOP00000015615	ENSSTOP00000031366	ATPase family AAA domain containing 5.	Ubiquitin-like domain-containing protein.	0.584
ATAD5	I3MU87_ICTTR	ENSSTOP00000015615	ENSSTOP00000015682	ATPase family AAA domain containing 5.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.979
ATAD5	I3MUA8_ICTTR	ENSSTOP00000015615	ENSSTOP00000015703	ATPase family AAA domain containing 5.	AAA domain-containing protein.	0.984
ATAD5	LOC101966763	ENSSTOP00000015615	ENSSTOP00000019666	ATPase family AAA domain containing 5.	Ubiquitin-like domain-containing protein.	0.584
ATAD5	MEIOB	ENSSTOP00000015615	ENSSTOP00000022367	ATPase family AAA domain containing 5.	Meiosis specific with OB-fold.	0.823
ATAD5	POLD1	ENSSTOP00000015615	ENSSTOP00000010431	ATPase family AAA domain containing 5.	DNA polymerase.	0.887
ATAD5	POLD2	ENSSTOP00000015615	ENSSTOP00000002426	ATPase family AAA domain containing 5.	DNA polymerase delta 2, accessory subunit.	0.773
ATAD5	POLE	ENSSTOP00000015615	ENSSTOP00000016013	ATPase family AAA domain containing 5.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.929
ATAD5	POLE2	ENSSTOP00000015615	ENSSTOP00000006287	ATPase family AAA domain containing 5.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.885
ATAD5	POLE4	ENSSTOP00000015615	ENSSTOP00000026176	ATPase family AAA domain containing 5.	DNA polymerase epsilon 4, accessory subunit.	0.785
ATAD5	Pcna	ENSSTOP00000015615	ENSSTOP00000022388	ATPase family AAA domain containing 5.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.979
ATAD5	Pold3	ENSSTOP00000015615	ENSSTOP00000000407	ATPase family AAA domain containing 5.	Uncharacterized protein.	0.779
ATAD5	Pold4	ENSSTOP00000015615	ENSSTOP00000014053	ATPase family AAA domain containing 5.	Uncharacterized protein.	0.533
ATAD5	Pole3	ENSSTOP00000015615	ENSSTOP00000020900	ATPase family AAA domain containing 5.	CBFD_NFYB_HMF domain-containing protein.	0.769