14 items (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKT3	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (479 aa)
	LOC101966763	Ubiquitin-like domain-containing protein. (156 aa)
	ERBB3	Erb-b2 receptor tyrosine kinase 3. (1248 aa)
	AKT1	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (480 aa)
	ENSSTOP00000028703	Ubiquitin-like domain-containing protein. (122 aa)
	ENSSTOP00000031366	Ubiquitin-like domain-containing protein. (95 aa)
	NRG1	Neuregulin 1. (700 aa)
	AKT2	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (467 aa)
	RNF41	Ring finger protein 41. (317 aa)
	ERBB2	Receptor protein-tyrosine kinase. (1256 aa)
	UBA52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (232 aa)
	USP8	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family. (1097 aa)
	Rps27a	Ubiquitin-like domain-containing protein. (156 aa)
	NRG2	Neuregulin 2. (767 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKT1	AKT2	ENSSTOP00000028457	ENSSTOP00000002612	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.968
AKT1	AKT3	ENSSTOP00000028457	ENSSTOP00000009513	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.896
AKT1	ERBB2	ENSSTOP00000028457	ENSSTOP00000003374	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Receptor protein-tyrosine kinase.	0.419
AKT1	ERBB3	ENSSTOP00000028457	ENSSTOP00000023609	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Erb-b2 receptor tyrosine kinase 3.	0.609
AKT1	NRG1	ENSSTOP00000028457	ENSSTOP00000032253	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Neuregulin 1.	0.416
AKT1	USP8	ENSSTOP00000028457	ENSSTOP00000005307	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.	0.720
AKT2	AKT1	ENSSTOP00000002612	ENSSTOP00000028457	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.968
AKT2	AKT3	ENSSTOP00000002612	ENSSTOP00000009513	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.883
AKT2	ERBB2	ENSSTOP00000002612	ENSSTOP00000003374	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Receptor protein-tyrosine kinase.	0.426
AKT2	ERBB3	ENSSTOP00000002612	ENSSTOP00000023609	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Erb-b2 receptor tyrosine kinase 3.	0.421
AKT2	USP8	ENSSTOP00000002612	ENSSTOP00000005307	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.	0.700
AKT3	AKT1	ENSSTOP00000009513	ENSSTOP00000028457	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.896
AKT3	AKT2	ENSSTOP00000009513	ENSSTOP00000002612	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.883
AKT3	ERBB3	ENSSTOP00000009513	ENSSTOP00000023609	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Erb-b2 receptor tyrosine kinase 3.	0.425
AKT3	USP8	ENSSTOP00000009513	ENSSTOP00000005307	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.	0.700
ENSSTOP00000028703	ENSSTOP00000031366	ENSSTOP00000028703	ENSSTOP00000031366	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.985
ENSSTOP00000028703	LOC101966763	ENSSTOP00000028703	ENSSTOP00000019666	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.985
ENSSTOP00000028703	NRG1	ENSSTOP00000028703	ENSSTOP00000032253	Ubiquitin-like domain-containing protein.	Neuregulin 1.	0.530
ENSSTOP00000028703	NRG2	ENSSTOP00000028703	ENSSTOP00000017675	Ubiquitin-like domain-containing protein.	Neuregulin 2.	0.530
ENSSTOP00000028703	RNF41	ENSSTOP00000028703	ENSSTOP00000003148	Ubiquitin-like domain-containing protein.	Ring finger protein 41.	0.804