STRINGSTRING
POLE4 POLE4 EYA4 EYA4 LOC101973038 LOC101973038 SIRT6 SIRT6 BAP1 BAP1 ENSSTOP00000025372 ENSSTOP00000025372 ENSSTOP00000025090 ENSSTOP00000025090 ATM ATM CLSPN CLSPN UBE2V2 UBE2V2 Kdm4a Kdm4a H2BC21 H2BC21 RFC1 RFC1 CDK3 CDK3 ABRAXAS1 ABRAXAS1 CCNA2 CCNA2 Babam1 Babam1 EME1 EME1 APBB1 APBB1 PARP2 PARP2 I3N0J6_ICTTR I3N0J6_ICTTR RFC2 RFC2 LOC101957469 LOC101957469 Slx1a Slx1a SLX4 SLX4 RMI1 RMI1 HUS1 HUS1 H2BC1 H2BC1 LOC101957760 LOC101957760 LOC101978127 LOC101978127 RPA1 RPA1 MDC1 MDC1 LOC106145261 LOC106145261 POLE POLE PAXIP1 PAXIP1 ATR ATR H2BC5 H2BC5 I3MUA8_ICTTR I3MUA8_ICTTR I3MU87_ICTTR I3MU87_ICTTR LOC106145260 LOC106145260 XRCC1 XRCC1 NSD2 NSD2 RIF1 RIF1 Palb2 Palb2 XRCC3 XRCC3 TMEM182 TMEM182 PARP1 PARP1 RAD51B RAD51B Pold4 Pold4 NBN NBN TOP3A TOP3A RCBTB2 RCBTB2 H2AX H2AX TIMELESS TIMELESS SLF1 SLF1 GEN1 GEN1 I3MLW0_ICTTR I3MLW0_ICTTR WRN WRN ERCC4 ERCC4 DNTT DNTT BABAM2 BABAM2 MAPK8 MAPK8 Rfc4 Rfc4 PIAS4 PIAS4 RAD9B RAD9B Rbbp8 Rbbp8 DNA2 DNA2 POLD1 POLD1 CHEK2 CHEK2 POLL POLL BRIP1 BRIP1 SPIDR SPIDR POLH POLH Ube2i Ube2i ATRIP ATRIP POLQ POLQ Rad50 Rad50 PRKDC PRKDC RAD1 RAD1 Rps27a Rps27a XRCC6 XRCC6 CNPPD1 CNPPD1 SLC23A3 SLC23A3 TIPIN TIPIN XRCC4 XRCC4 RPA3 RPA3 ENSSTOP00000026845 ENSSTOP00000026845 ENSSTOP00000027930 ENSSTOP00000027930 TOPBP1 TOPBP1 RAD51D RAD51D ENSSTOP00000028194 ENSSTOP00000028194 Polk Polk ENSSTOP00000028703 ENSSTOP00000028703 CDK2 CDK2 ENSSTOP00000028911 ENSSTOP00000028911 ENSSTOP00000028952 ENSSTOP00000028952 KAT5 KAT5 LOC101972801 LOC101972801 ENSSTOP00000029771 ENSSTOP00000029771 ENSSTOP00000029801 ENSSTOP00000029801 ENSSTOP00000029812 ENSSTOP00000029812 LOC101976763 LOC101976763 H2BC6 H2BC6 EYA3 EYA3 Apbb2 Apbb2 HERC2 HERC2 ENSSTOP00000031366 ENSSTOP00000031366 Sumo1 Sumo1 RHNO1 RHNO1 Pole3 Pole3 LOC101954853 LOC101954853 LOC106145262 LOC106145262 LOC101966763 LOC101966763 NHEJ1 NHEJ1 BRCC3 BRCC3 LOC101970966 LOC101970966 LOC101972712 LOC101972712 Rfc5 Rfc5 MRE11 MRE11 LOC101975357 LOC101975357 ENSSTOP00000025041 ENSSTOP00000025041 LOC101971599 LOC101971599 LOC101962379 LOC101962379 PPP4R2 PPP4R2 TP53 TP53 RAD9A RAD9A KPNA2 KPNA2 LIG4 LIG4 PPP5C PPP5C H2BU1 H2BU1 LOC101967236 LOC101967236 PPP4C PPP4C Pcna Pcna MEIOB MEIOB LOC101954827 LOC101954827 RCBTB1 RCBTB1 LOC101976322 LOC101976322 KDM4B KDM4B EXD2 EXD2 I3LWG0_ICTTR I3LWG0_ICTTR RFC3 RFC3 Pold3 Pold3 RNF169 RNF169 Brca1 Brca1 I3LWU8_ICTTR I3LWU8_ICTTR EME2 EME2 LOC101954381 LOC101954381 I3LZW4_ICTTR I3LZW4_ICTTR DCLRE1C DCLRE1C BARD1 BARD1 XRCC2 XRCC2 CHEK1 CHEK1 PARP3 PARP3 POLM POLM POLD2 POLD2 ERCC1 ERCC1 RAD51C RAD51C MUS81 MUS81 FEN1 FEN1 CCNA1 CCNA1 UBXN1 UBXN1 RPA2 RPA2 RAD52 RAD52 UBA52 UBA52 RAD17 RAD17 TDP1 TDP1 EYA2 EYA2 BLM BLM EYA1 EYA1 I3M6A8_ICTTR I3M6A8_ICTTR LIG3 LIG3 SIRT7 SIRT7 XRCC5 XRCC5 TP53BP1 TP53BP1 POLE2 POLE2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
POLE4DNA polymerase epsilon 4, accessory subunit. (115 aa)
EYA4Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (615 aa)
LOC101973038UmuC domain-containing protein. (265 aa)
SIRT6Sirtuin 6. (351 aa)
BAP1Ubiquitin carboxyl-terminal hydrolase. (729 aa)
ENSSTOP00000025372CBFD_NFYB_HMF domain-containing protein. (134 aa)
ENSSTOP00000025090UBIQUITIN_CONJUGAT_2 domain-containing protein. (125 aa)
ATMATM serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2618 aa)
CLSPNClaspin. (1320 aa)
UBE2V2Ubiquitin conjugating enzyme E2 V2. (145 aa)
Kdm4aUncharacterized protein. (1064 aa)
H2BC21Histone H2B; Belongs to the histone H2B family. (126 aa)
RFC1Replication factor C subunit 1. (1118 aa)
CDK3Cyclin dependent kinase 3; Belongs to the protein kinase superfamily. (304 aa)
ABRAXAS1Abraxas 1, BRCA1 A complex subunit. (409 aa)
CCNA2Cyclin A2; Belongs to the cyclin family. (420 aa)
Babam1BRISC and BRCA1 A complex member 1. (335 aa)
EME1Essential meiotic structure-specific endonuclease 1. (571 aa)
APBB1Amyloid beta precursor protein binding family B member 1. (708 aa)
PARP2Poly [ADP-ribose] polymerase. (566 aa)
I3N0J6_ICTTRRAP80_UIM domain-containing protein. (166 aa)
RFC2Replication factor C subunit 2. (321 aa)
LOC101957469Histone H2B type 1-K. (126 aa)
Slx1aStructure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. Has a preference for 5'-flap structures, and promotes symmetrical cleavage of static and migrating Holliday junctions (HJs). Resolves HJs by generating two pairs of ligatable, nicked duplex products. (274 aa)
SLX4SLX4 structure-specific endonuclease subunit. (1748 aa)
RMI1RecQ mediated genome instability 1. (625 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (281 aa)
H2BC1Histone H2B; Belongs to the histone H2B family. (127 aa)
LOC101957760Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC101978127Histone H4. (103 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (592 aa)
MDC1Mediator of DNA damage checkpoint 1. (1845 aa)
LOC106145261Histone H4. (103 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2282 aa)
PAXIP1PAX interacting protein 1. (1032 aa)
ATRATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2644 aa)
H2BC5Histone H2B; Belongs to the histone H2B family. (126 aa)
I3MUA8_ICTTRAAA domain-containing protein. (312 aa)
I3MU87_ICTTRProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (250 aa)
LOC106145260Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
XRCC1X-ray repair cross complementing 1. (632 aa)
NSD2Nuclear receptor binding SET domain protein 2. (1365 aa)
RIF1Replication timing regulatory factor 1. (2480 aa)
Palb2PALB2_WD40 domain-containing protein. (384 aa)
XRCC3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (349 aa)
TMEM182Transmembrane protein 182. (229 aa)
PARP1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1014 aa)
RAD51BRAD51 paralog B. (258 aa)
Pold4Uncharacterized protein. (107 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (634 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1007 aa)
RCBTB2RCC1 and BTB domain containing protein 2. (551 aa)
H2AXHistone H2A; Belongs to the histone H2A family. (143 aa)
TIMELESSTimeless circadian regulator. (1147 aa)
SLF1SMC5-SMC6 complex localization factor 1. (1057 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (913 aa)
I3MLW0_ICTTRUncharacterized protein. (78 aa)
WRNWRN RecQ like helicase. (1448 aa)
ERCC4ERCC excision repair 4, endonuclease catalytic subunit. (916 aa)
DNTTDNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator. (467 aa)
BABAM2BRISC and BRCA1 A complex member 2. (406 aa)
MAPK8Mitogen-activated protein kinase. (427 aa)
Rfc4AAA domain-containing protein. (364 aa)
PIAS4Protein inhibitor of activated STAT 4. (472 aa)
RAD9BCell cycle checkpoint control protein; Belongs to the rad9 family. (403 aa)
Rbbp8CtIP_N domain-containing protein. (773 aa)
DNA2DNA replication helicase/nuclease 2. (1060 aa)
POLD1DNA polymerase. (1106 aa)
CHEK2Checkpoint kinase 2. (545 aa)
POLLDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (575 aa)
BRIP1BRCA1 interacting protein C-terminal helicase 1. (937 aa)
SPIDRScaffold protein involved in DNA repair. (948 aa)
POLHDNA polymerase eta. (714 aa)
Ube2iSUMO-conjugating enzyme UBC9; Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2, CBX4 and ZNF451. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture and chromosome segregation (By similarity). Necessary for sumoylation of FOXL2 and KAT5. Sumoylates p53/TP53 at 'Lys-386'; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
ATRIPATR interacting protein. (793 aa)
POLQDNA polymerase theta. (2588 aa)
Rad50Zinc-hook domain-containing protein. (1312 aa)
PRKDCProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4130 aa)
RAD1RAD1 checkpoint DNA exonuclease. (279 aa)
Rps27aUbiquitin-like domain-containing protein. (156 aa)
XRCC6X-ray repair cross complementing 6. (609 aa)
CNPPD1Cyclin Pas1/PHO80 domain containing 1. (411 aa)
SLC23A3Solute carrier family 23 member 3. (611 aa)
TIPINTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (297 aa)
XRCC4X-ray repair cross complementing 4. (330 aa)
RPA3Replication protein A3. (121 aa)
ENSSTOP00000026845Histone H2B; Belongs to the histone H2B family. (101 aa)
ENSSTOP00000027930Uncharacterized protein. (173 aa)
TOPBP1DNA topoisomerase II binding protein 1. (1527 aa)
RAD51DDNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily. (329 aa)
ENSSTOP00000028194SAE2 domain-containing protein. (75 aa)
PolkUmuC domain-containing protein. (541 aa)
ENSSTOP00000028703Ubiquitin-like domain-containing protein. (122 aa)
CDK2Cyclin dependent kinase 2; Belongs to the protein kinase superfamily. (346 aa)
ENSSTOP00000028911UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (203 aa)
ENSSTOP00000028952Uncharacterized protein. (103 aa)
KAT5Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (546 aa)
LOC101972801Histone H4. (103 aa)
ENSSTOP00000029771AAA domain-containing protein. (336 aa)
ENSSTOP00000029801RING-type domain-containing protein. (191 aa)
ENSSTOP00000029812Small ubiquitin-related modifier. (112 aa)
LOC101976763Uncharacterized LOC101976763. (103 aa)
H2BC6Histone H2B type 1. (126 aa)
EYA3Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (573 aa)
Apbb2Uncharacterized protein. (761 aa)
HERC2HECT and RLD domain containing E3 ubiquitin protein ligase 2. (4835 aa)
ENSSTOP00000031366Ubiquitin-like domain-containing protein. (95 aa)
Sumo1Small ubiquitin-related modifier 1; Ubiquitin-like protein that can be covalently attached to proteins as a monomer or a lysine-linked polymer. Covalent attachment via an isopeptide bond to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by E3 ligases such as PIAS1-4, RANBP2 or CBX4. This post- translational modification on lysine residues of proteins plays a crucial role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Involved for insta [...] (101 aa)
RHNO1RAD9-HUS1-RAD1 interacting nuclear orphan 1. (240 aa)
Pole3CBFD_NFYB_HMF domain-containing protein. (147 aa)
LOC101954853Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC106145262Histone H4. (103 aa)
LOC101966763Ubiquitin-like domain-containing protein. (156 aa)
NHEJ1Non-homologous end joining factor 1. (301 aa)
BRCC3BRCA1/BRCA2-containing complex subunit 3. (291 aa)
LOC101970966Histone domain-containing protein; Belongs to the histone H2B family. (129 aa)
LOC101972712Histone H2B type 1. (126 aa)
Rfc5AAA domain-containing protein. (340 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (707 aa)
LOC101975357Histone H2B type 1. (126 aa)
ENSSTOP00000025041UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (135 aa)
LOC101971599Uncharacterized protein. (730 aa)
LOC101962379Histone H2B; Belongs to the histone H2B family. (126 aa)
PPP4R2Protein phosphatase 4 regulatory subunit 2. (455 aa)
TP53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (391 aa)
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (383 aa)
KPNA2Importin subunit alpha; Functions in nuclear protein import. (529 aa)
LIG4DNA ligase. (911 aa)
PPP5CSerine/threonine-protein phosphatase. (499 aa)
H2BU1Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC101967236Histone H4. (103 aa)
PPP4CSerine/threonine-protein phosphatase. (307 aa)
PcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
MEIOBMeiosis specific with OB-fold. (471 aa)
LOC101954827Histone domain-containing protein; Belongs to the histone H2B family. (122 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
LOC101976322Uncharacterized protein. (604 aa)
KDM4BLysine demethylase 4B. (1107 aa)
EXD2Exonuclease 3'-5' domain containing 2. (631 aa)
I3LWG0_ICTTRRECA_2 domain-containing protein. (187 aa)
RFC3Replication factor C subunit 3. (339 aa)
Pold3Uncharacterized protein. (467 aa)
RNF169Ring finger protein 169. (550 aa)
Brca1Uncharacterized protein. (353 aa)
I3LWU8_ICTTRUncharacterized protein. (69 aa)
EME2Essential meiotic structure-specific endonuclease subunit 2. (307 aa)
LOC101954381UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (176 aa)
I3LZW4_ICTTRUBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (129 aa)
DCLRE1CDNA cross-link repair 1C. (689 aa)
BARD1BRCA1 associated RING domain 1. (776 aa)
XRCC2X-ray repair cross complementing 2. (278 aa)
CHEK1Checkpoint kinase 1; Belongs to the protein kinase superfamily. (432 aa)
PARP3Poly [ADP-ribose] polymerase. (529 aa)
POLMDNA-directed DNA/RNA polymerase mu; Gap-filling polymerase involved in repair of DNA double- strand breaks by non-homologous end joining (NHEJ). Belongs to the DNA polymerase type-X family. (494 aa)
POLD2DNA polymerase delta 2, accessory subunit. (469 aa)
ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit. (298 aa)
RAD51CRAD51 paralog C. (360 aa)
MUS81MUS81 structure-specific endonuclease subunit. (567 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
CCNA1Cyclin A1; Belongs to the cyclin family. (421 aa)
UBXN1UBX domain protein 1. (297 aa)
RPA2Replication protein A2. (271 aa)
RAD52RAD52 homolog, DNA repair protein. (422 aa)
UBA52Ubiquitin A-52 residue ribosomal protein fusion product 1. (232 aa)
RAD17RAD17 checkpoint clamp loader component. (699 aa)
TDP1Tyrosyl-DNA phosphodiesterase 1. (618 aa)
EYA2Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (551 aa)
BLMBLM RecQ like helicase. (1414 aa)
EYA1Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (592 aa)
I3M6A8_ICTTRUncharacterized protein. (968 aa)
LIG3DNA ligase. (1013 aa)
SIRT7Sirtuin 7. (339 aa)
XRCC5X-ray repair cross complementing 5. (734 aa)
TP53BP1Tumor protein p53 binding protein 1. (1968 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (504 aa)
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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