53 items (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rps27a	Ubiquitin-like domain-containing protein. (156 aa)
	GTF2H1	General transcription factor IIH subunit 1. (548 aa)
	RFC3	Replication factor C subunit 3. (339 aa)
	Pold3	Uncharacterized protein. (467 aa)
	PARP3	Poly [ADP-ribose] polymerase. (529 aa)
	POLD2	DNA polymerase delta 2, accessory subunit. (469 aa)
	XPA	XPA, DNA damage recognition and repair factor. (275 aa)
	ERCC1	ERCC excision repair 1, endonuclease non-catalytic subunit. (298 aa)
	GTF2H5	General transcription factor IIH subunit 5. (74 aa)
	CUL4A	Cullin 4A; Belongs to the cullin family. (671 aa)
	RPA2	Replication protein A2. (271 aa)
	UBA52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (232 aa)
	GTF2H3	General transcription factor IIH subunit 3. (309 aa)
	Bivm	Uncharacterized protein. (503 aa)
	LOC101968680	ERCC excision repair 5, endonuclease. (1170 aa)
	POLE2	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (504 aa)
	CHD1L	Chromodomain helicase DNA binding protein 1 like. (853 aa)
	RFC1	Replication factor C subunit 1. (1118 aa)
	DDB2	Damage specific DNA binding protein 2. (430 aa)
	DDB1	Damage specific DNA binding protein 1. (1140 aa)
	ERCC3	ERCC excision repair 3, TFIIH core complex helicase subunit. (782 aa)
	POLD1	DNA polymerase. (1106 aa)
	Rfc4	AAA domain-containing protein. (364 aa)
	ERCC4	ERCC excision repair 4, endonuclease catalytic subunit. (916 aa)
	RCBTB2	RCC1 and BTB domain containing protein 2. (551 aa)
	Rbx1	RING-type domain-containing protein. (108 aa)
	Pold4	Uncharacterized protein. (107 aa)
	PARP1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1014 aa)
	I3MU87_ICTTR	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (250 aa)
	I3MUA8_ICTTR	AAA domain-containing protein. (312 aa)
	POLE	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2282 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (592 aa)
	CUL4B	Cullin 4B; Belongs to the cullin family. (970 aa)
	RFC2	Replication factor C subunit 2. (321 aa)
	I3N110_ICTTR	RING-type domain-containing protein. (147 aa)
	PARP2	Poly [ADP-ribose] polymerase. (566 aa)
	LOC101966763	Ubiquitin-like domain-containing protein. (156 aa)
	Pole3	CBFD_NFYB_HMF domain-containing protein. (147 aa)
	Pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
	Gtf2h2c	General transcription factor IIH subunit. (395 aa)
	GTF2H4	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
	Rfc5	AAA domain-containing protein. (340 aa)
	ENSSTOP00000025372	CBFD_NFYB_HMF domain-containing protein. (134 aa)
	LOC101973038	UmuC domain-containing protein. (265 aa)
	POLE4	DNA polymerase epsilon 4, accessory subunit. (115 aa)
	RCBTB1	RCC1 and BTB domain containing protein 1. (531 aa)
	RPA3	Replication protein A3. (121 aa)
	ERCC2	ERCC excision repair 2, TFIIH core complex helicase subunit. (760 aa)
	Polk	UmuC domain-containing protein. (541 aa)
	ENSSTOP00000028703	Ubiquitin-like domain-containing protein. (122 aa)
	ENSSTOP00000028717	RING-type domain-containing protein. (95 aa)
	ENSSTOP00000029771	AAA domain-containing protein. (336 aa)
	ENSSTOP00000031366	Ubiquitin-like domain-containing protein. (95 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bivm	CHD1L	ENSSTOP00000005638	ENSSTOP00000006296	Uncharacterized protein.	Chromodomain helicase DNA binding protein 1 like.	0.804
Bivm	CUL4A	ENSSTOP00000005638	ENSSTOP00000003536	Uncharacterized protein.	Cullin 4A; Belongs to the cullin family.	0.651
Bivm	CUL4B	ENSSTOP00000005638	ENSSTOP00000016861	Uncharacterized protein.	Cullin 4B; Belongs to the cullin family.	0.651
Bivm	DDB1	ENSSTOP00000005638	ENSSTOP00000006801	Uncharacterized protein.	Damage specific DNA binding protein 1.	0.822
Bivm	DDB2	ENSSTOP00000005638	ENSSTOP00000006764	Uncharacterized protein.	Damage specific DNA binding protein 2.	0.738
Bivm	ENSSTOP00000025372	ENSSTOP00000005638	ENSSTOP00000025372	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.609
Bivm	ENSSTOP00000028703	ENSSTOP00000005638	ENSSTOP00000028703	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.484
Bivm	ENSSTOP00000028717	ENSSTOP00000005638	ENSSTOP00000028717	Uncharacterized protein.	RING-type domain-containing protein.	0.554
Bivm	ENSSTOP00000029771	ENSSTOP00000005638	ENSSTOP00000029771	Uncharacterized protein.	AAA domain-containing protein.	0.672
Bivm	ENSSTOP00000031366	ENSSTOP00000005638	ENSSTOP00000031366	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.558
Bivm	ERCC1	ENSSTOP00000005638	ENSSTOP00000002502	Uncharacterized protein.	ERCC excision repair 1, endonuclease non-catalytic subunit.	0.863
Bivm	ERCC2	ENSSTOP00000005638	ENSSTOP00000027139	Uncharacterized protein.	ERCC excision repair 2, TFIIH core complex helicase subunit.	0.970
Bivm	ERCC3	ENSSTOP00000005638	ENSSTOP00000009868	Uncharacterized protein.	ERCC excision repair 3, TFIIH core complex helicase subunit.	0.981
Bivm	ERCC4	ENSSTOP00000005638	ENSSTOP00000011957	Uncharacterized protein.	ERCC excision repair 4, endonuclease catalytic subunit.	0.925
Bivm	GTF2H1	ENSSTOP00000005638	ENSSTOP00000000013	Uncharacterized protein.	General transcription factor IIH subunit 1.	0.980
Bivm	GTF2H3	ENSSTOP00000005638	ENSSTOP00000005530	Uncharacterized protein.	General transcription factor IIH subunit 3.	0.788
Bivm	GTF2H4	ENSSTOP00000005638	ENSSTOP00000023175	Uncharacterized protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.729
Bivm	GTF2H5	ENSSTOP00000005638	ENSSTOP00000003099	Uncharacterized protein.	General transcription factor IIH subunit 5.	0.782
Bivm	Gtf2h2c	ENSSTOP00000005638	ENSSTOP00000022996	Uncharacterized protein.	General transcription factor IIH subunit.	0.937
Bivm	I3MU87_ICTTR	ENSSTOP00000005638	ENSSTOP00000015682	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.940