STRINGSTRING
SMUG1 SMUG1 RFC3 RFC3 MPG MPG OGG1 OGG1 PARP3 PARP3 POLD2 POLD2 VWA5A VWA5A FEN1 FEN1 RPA2 RPA2 Pold3 Pold3 PARG PARG PARP2 PARP2 RFC2 RFC2 LOC101957469 LOC101957469 LOC101957760 LOC101957760 RPA1 RPA1 MBD4 MBD4 POLE POLE NEIL1 NEIL1 POLB POLB LIG3 LIG3 UNG UNG POLE2 POLE2 RFC1 RFC1 VWA5B1 VWA5B1 APEX1 APEX1 POLD1 POLD1 Rfc4 Rfc4 NTHL1 NTHL1 PNKP PNKP Pole3 Pole3 APEX2 APEX2 MEIOB MEIOB Pcna Pcna LOC101972712 LOC101972712 Rfc5 Rfc5 ENSSTOP00000025372 ENSSTOP00000025372 POLE4 POLE4 LIG1 LIG1 RCBTB1 RCBTB1 RPA3 RPA3 Mutyh Mutyh TDG TDG ENSSTOP00000029771 ENSSTOP00000029771 ADPRHL2 ADPRHL2 VWA5B2 VWA5B2 RCBTB2 RCBTB2 I3MUA8_ICTTR I3MUA8_ICTTR Pold4 Pold4 PARP1 PARP1 NEIL3 NEIL3 XRCC1 XRCC1 ATAD5 ATAD5 I3MU87_ICTTR I3MU87_ICTTR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMUG1Single-strand-selective monofunctional uracil-DNA glycosylase 1. (272 aa)
RFC3Replication factor C subunit 3. (339 aa)
MPGN-methylpurine DNA glycosylase. (313 aa)
OGG18-oxoguanine DNA glycosylase. (344 aa)
PARP3Poly [ADP-ribose] polymerase. (529 aa)
POLD2DNA polymerase delta 2, accessory subunit. (469 aa)
VWA5AVon Willebrand factor A domain containing 5A. (799 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
RPA2Replication protein A2. (271 aa)
Pold3Uncharacterized protein. (467 aa)
PARGPoly(ADP-ribose) glycohydrolase. (976 aa)
PARP2Poly [ADP-ribose] polymerase. (566 aa)
RFC2Replication factor C subunit 2. (321 aa)
LOC101957469Histone H2B type 1-K. (126 aa)
LOC101957760Histone H2B; Belongs to the histone H2B family. (126 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (592 aa)
MBD4Methyl-CpG-binding domain protein 4; Mismatch-specific DNA N-glycosylase involved in DNA repair. Has thymine glycosylase activity and is specific for G:T mismatches within methylated and unmethylated CpG sites. Can also remove uracil or 5-fluorouracil in G:U mismatches. Has no lyase activity. Was first identified as methyl-CpG-binding protein. (561 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2282 aa)
NEIL1Nei like DNA glycosylase 1. (390 aa)
POLBDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (306 aa)
LIG3DNA ligase. (1013 aa)
UNGUracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. (313 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (504 aa)
RFC1Replication factor C subunit 1. (1118 aa)
VWA5B1Von Willebrand factor A domain containing 5B1. (1219 aa)
APEX1DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (318 aa)
POLD1DNA polymerase. (1106 aa)
Rfc4AAA domain-containing protein. (364 aa)
NTHL1Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. (303 aa)
PNKPPolynucleotide kinase 3'-phosphatase. (520 aa)
Pole3CBFD_NFYB_HMF domain-containing protein. (147 aa)
APEX2DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (518 aa)
MEIOBMeiosis specific with OB-fold. (471 aa)
PcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
LOC101972712Histone H2B type 1. (126 aa)
Rfc5AAA domain-containing protein. (340 aa)
ENSSTOP00000025372CBFD_NFYB_HMF domain-containing protein. (134 aa)
POLE4DNA polymerase epsilon 4, accessory subunit. (115 aa)
LIG1DNA ligase. (922 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
RPA3Replication protein A3. (121 aa)
MutyhAdenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (537 aa)
TDGThymine DNA glycosylase. (411 aa)
ENSSTOP00000029771AAA domain-containing protein. (336 aa)
ADPRHL2ADP-ribosylhydrolase like 2. (389 aa)
VWA5B2Von Willebrand factor A domain containing 5B2. (1266 aa)
RCBTB2RCC1 and BTB domain containing protein 2. (551 aa)
I3MUA8_ICTTRAAA domain-containing protein. (312 aa)
Pold4Uncharacterized protein. (107 aa)
PARP1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1014 aa)
NEIL3Nei like DNA glycosylase 3. (607 aa)
XRCC1X-ray repair cross complementing 1. (632 aa)
ATAD5ATPase family AAA domain containing 5. (1897 aa)
I3MU87_ICTTRProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (250 aa)
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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