(6 nodes) Modified RING finger domain network (Ictidomys tridecemlineatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	STUB1	STIP1 homology and U-box containing protein 1. (303 aa)
	WDSUB1	WD repeat, sterile alpha motif and U-box domain containing 1. (476 aa)
	PPIL2	Peptidylprolyl isomerase like 2. (521 aa)
	PRPF19	Pre-mRNA processing factor 19. (512 aa)
	UBE4B	Ubiquitination factor E4B. (1311 aa)
	UBOX5	U-box domain containing 5. (541 aa)

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PPIL2	PRPF19	ENSSTOP00000000815	ENSSTOP00000031412	Peptidylprolyl isomerase like 2.	Pre-mRNA processing factor 19.	0.869
PRPF19	PPIL2	ENSSTOP00000031412	ENSSTOP00000000815	Pre-mRNA processing factor 19.	Peptidylprolyl isomerase like 2.	0.869
STUB1	UBE4B	ENSSTOP00000015204	ENSSTOP00000024705	STIP1 homology and U-box containing protein 1.	Ubiquitination factor E4B.	0.743
STUB1	UBOX5	ENSSTOP00000015204	ENSSTOP00000015886	STIP1 homology and U-box containing protein 1.	U-box domain containing 5.	0.513
UBE4B	STUB1	ENSSTOP00000024705	ENSSTOP00000015204	Ubiquitination factor E4B.	STIP1 homology and U-box containing protein 1.	0.743
UBOX5	STUB1	ENSSTOP00000015886	ENSSTOP00000015204	U-box domain containing 5.	STIP1 homology and U-box containing protein 1.	0.513