STRINGSTRING
LSM8 LSM8 ENO2 ENO2 ENSSTOP00000027114 ENSSTOP00000027114 C1D C1D EXOSC10 EXOSC10 ENSSTOP00000028039 ENSSTOP00000028039 CCT7 CCT7 CCT4 CCT4 LOC101973964 LOC101973964 EXOSC1 EXOSC1 ZCCHC9 ZCCHC9 LSM3 LSM3 LSM8-2 LSM8-2 ENSSTOP00000029275 ENSSTOP00000029275 PABPC4 PABPC4 DHX30 DHX30 LSM5 LSM5 LOC101957349 LOC101957349 EDC3 EDC3 EXOSC2 EXOSC2 Lsm5 Lsm5 PATL2 PATL2 PAN2 PAN2 CNOT1 CNOT1 LSM7 LSM7 CNBP CNBP EXD2 EXD2 DIS3 DIS3 XRN2 XRN2 ENO3 ENO3 TMEM87A TMEM87A I3LY53_ICTTR I3LY53_ICTTR CCT3 CCT3 PFKM PFKM LOC101974202 LOC101974202 SLC30A6 SLC30A6 DPH2 DPH2 EXOSC4 EXOSC4 ENO4 ENO4 LSM6 LSM6 CNOT6 CNOT6 EDC4 EDC4 PABPC1L PABPC1L DHX36 DHX36 DHX57 DHX57 TENT4A TENT4A CCT5 CCT5 DCP1A DCP1A PLXDC2 PLXDC2 PPIB PPIB SLC30A7 SLC30A7 PNLDC1 PNLDC1 DIS3L2 DIS3L2 I3M6L6_ICTTR I3M6L6_ICTTR EXOSC7 EXOSC7 PFKP PFKP PPIC PPIC Tob1 Tob1 WRAP73 WRAP73 PARN PARN WDR61 WDR61 PDE12 PDE12 EXOSC9 EXOSC9 HSPA9 HSPA9 DIS3L DIS3L BTG4 BTG4 PAN3 PAN3 IPO7 IPO7 EXOSC3 EXOSC3 DCPS DCPS Btg3 Btg3 SLC30A5 SLC30A5 CCT6A CCT6A TOE1 TOE1 DHX29 DHX29 MTREX MTREX ERMARD ERMARD NUDT16 NUDT16 ENO1 ENO1 UFSP2 UFSP2 LSM2 LSM2 DCP2 DCP2 XRN1 XRN1 WRN WRN PATL1 PATL1 CCT2 CCT2 TTC37 TTC37 MKKS MKKS DDX6 DDX6 SKIV2L SKIV2L NOCT NOCT CNOT9 CNOT9 CWH43 CWH43 CNOT10 CNOT10 CNOT6L CNOT6L ZCCHC2 ZCCHC2 I3MPV3_ICTTR I3MPV3_ICTTR Tob2 Tob2 LRRC27 LRRC27 NUDT18 NUDT18 LSM1 LSM1 HELZ2 HELZ2 NAXE NAXE LOC101978573 LOC101978573 Cbwd1 Cbwd1 ZCCHC13 ZCCHC13 ICE1 ICE1 UFSP1 UFSP1 BBS10 BBS10 CNOT3 CNOT3 Mphosph6 Mphosph6 PABPC3 PABPC3 NUDT6 NUDT6 I3N2F3_ICTTR I3N2F3_ICTTR VPS72 VPS72 PPP4R2 PPP4R2 LOC101978280 LOC101978280 DCP1B DCP1B I3N7W8_ICTTR I3N7W8_ICTTR PNPT1 PNPT1 PABPC4L PABPC4L TMEM87B TMEM87B DPH1 DPH1 TMEM176B TMEM176B C19orf54 C19orf54 EXOSC5 EXOSC5 PFKL PFKL EXOSC6 EXOSC6 DDX60 DDX60 PLXDC1 PLXDC1 CCT6B CCT6B BTG2 BTG2 PAM PAM Lsm4 Lsm4 CNOT4 CNOT4 Tcp1 Tcp1 ENSSTOP00000024694 ENSSTOP00000024694 CNOT2 CNOT2 ENSSTOP00000025355 ENSSTOP00000025355 ENSSTOP00000025407 ENSSTOP00000025407 LOC101962934 LOC101962934 Exosc8 Exosc8 LOC101961139 LOC101961139 ZCCHC7 ZCCHC7 CNOT7 CNOT7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
ENO2Enolase 2. (434 aa)
ENSSTOP00000027114Uncharacterized protein. (91 aa)
C1DC1D nuclear receptor corepressor. (141 aa)
EXOSC10Exosome component 10. (886 aa)
ENSSTOP00000028039Uncharacterized protein. (529 aa)
CCT7T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (541 aa)
CCT4T-complex protein 1 subunit delta. (539 aa)
LOC101973964Uncharacterized protein. (321 aa)
EXOSC1Exosome component 1. (195 aa)
ZCCHC9Zinc finger CCHC-type containing 9. (268 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
LSM8-2U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (108 aa)
ENSSTOP00000029275ECR1_N domain-containing protein. (121 aa)
PABPC4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (644 aa)
DHX30DExH-box helicase 30. (1235 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
LOC101957349Uncharacterized protein. (247 aa)
EDC3Enhancer of mRNA decapping 3. (508 aa)
EXOSC2Exosome component 2. (293 aa)
Lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
PATL2PAT1 homolog 2. (540 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1120 aa)
CNOT1CCR4-NOT transcription complex subunit 1. (2376 aa)
LSM7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (105 aa)
CNBPCCHC-type zinc finger nucleic acid binding protein. (177 aa)
EXD2Exonuclease 3'-5' domain containing 2. (631 aa)
DIS3DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (958 aa)
XRN25'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (950 aa)
ENO3Enolase 3. (434 aa)
TMEM87ATransmembrane protein 87A. (560 aa)
I3LY53_ICTTRUncharacterized protein. (200 aa)
CCT3T-complex protein 1 subunit gamma. (545 aa)
PFKMATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily. (780 aa)
LOC101974202ANK_REP_REGION domain-containing protein. (2485 aa)
SLC30A6Solute carrier family 30 member 6. (461 aa)
DPH22-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2. (489 aa)
EXOSC4Exosome component 4. (246 aa)
ENO4Enolase 4. (620 aa)
LSM6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
CNOT6CCR4-NOT transcription complex subunit 6. (557 aa)
EDC4Enhancer of mRNA decapping 4. (1405 aa)
PABPC1LPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (614 aa)
DHX36DEAH-box helicase 36. (1000 aa)
DHX57DExH-box helicase 57. (1386 aa)
TENT4ATerminal nucleotidyltransferase 4A. (542 aa)
CCT5Chaperonin containing TCP1 subunit 5. (541 aa)
DCP1ADecapping mRNA 1A. (582 aa)
PLXDC2Plexin domain containing 2. (529 aa)
PPIBPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (216 aa)
SLC30A7Solute carrier family 30 member 7. (376 aa)
PNLDC1PARN like, ribonuclease domain containing 1. (531 aa)
DIS3L2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase, such as ZCCHC11/TUT4. Mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. Mediates degradation of uridylated pre-let-7 miRNAs, contributing to the maintenance of embryonic stem (ES) cells. Essential for correct mi [...] (872 aa)
I3M6L6_ICTTRUncharacterized protein. (104 aa)
EXOSC7Exosome component 7. (291 aa)
PFKPATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily. (791 aa)
PPICPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (211 aa)
Tob1Uncharacterized protein. (345 aa)
WRAP73WD repeat containing, antisense to TP73. (460 aa)
PARNPoly(A)-specific ribonuclease. (634 aa)
WDR61WD repeat domain 61. (305 aa)
PDE12Phosphodiesterase 12. (609 aa)
EXOSC9Exosome component 9. (439 aa)
HSPA9Heat shock protein family A (Hsp70) member 9; Belongs to the heat shock protein 70 family. (679 aa)
DIS3LDIS3 like exosome 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (1007 aa)
BTG4BTG anti-proliferation factor 4. (230 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (881 aa)
IPO7Importin 7. (1038 aa)
EXOSC3Exosome component 3. (275 aa)
DCPSDecapping enzyme, scavenger. (335 aa)
Btg3Uncharacterized protein. (252 aa)
SLC30A5Solute carrier family 30 member 5. (766 aa)
CCT6AChaperonin containing TCP1 subunit 6A. (531 aa)
TOE1Target of EGR1, exonuclease. (508 aa)
DHX29ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1371 aa)
MTREXMtr4 exosome RNA helicase. (1042 aa)
ERMARDER membrane associated RNA degradation. (667 aa)
NUDT16Nudix hydrolase 16. (195 aa)
ENO1Enolase 1. (434 aa)
UFSP2UFM1 specific peptidase 2. (463 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
DCP2Decapping mRNA 2. (419 aa)
XRN15'-3' exoribonuclease 1. (1731 aa)
WRNWRN RecQ like helicase. (1448 aa)
PATL1PAT1 homolog 1, processing body mRNA decay factor. (764 aa)
CCT2Chaperonin containing TCP1 subunit 2. (535 aa)
TTC37Tetratricopeptide repeat domain 37. (1564 aa)
MKKSMcKusick-Kaufman syndrome. (570 aa)
DDX6DEAD-box helicase 6; Belongs to the DEAD box helicase family. (483 aa)
SKIV2LSki2 like RNA helicase. (1246 aa)
NOCTNocturnin. (367 aa)
CNOT9CCR4-NOT transcription complex subunit 9. (299 aa)
CWH43Cell wall biogenesis 43 C-terminal homolog. (699 aa)
CNOT10CCR4-NOT transcription complex subunit 10. (744 aa)
CNOT6LCCR4-NOT transcription complex subunit 6 like. (550 aa)
ZCCHC2Zinc finger CCHC-type containing 2. (916 aa)
I3MPV3_ICTTRImportin N-terminal domain-containing protein. (361 aa)
Tob2Uncharacterized protein. (345 aa)
LRRC27Leucine rich repeat containing 27. (517 aa)
NUDT18Nudix hydrolase 18; Belongs to the Nudix hydrolase family. (323 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. (82 aa)
HELZ2Helicase with zinc finger 2. (2881 aa)
NAXENAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX. (281 aa)
LOC101978573Uncharacterized protein. (200 aa)
Cbwd1CobW C-terminal domain-containing protein. (395 aa)
ZCCHC13Zinc finger CCHC-type containing 13. (170 aa)
ICE1Interactor of little elongation complex ELL subunit 1. (2264 aa)
UFSP1UFM1 specific peptidase 1 (inactive). (212 aa)
BBS10Bardet-Biedl syndrome 10. (723 aa)
CNOT3CCR4-NOT transcription complex subunit 3. (751 aa)
Mphosph6Uncharacterized protein. (161 aa)
PABPC3Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (607 aa)
NUDT6Nudix hydrolase 6; Belongs to the Nudix hydrolase family. (271 aa)
I3N2F3_ICTTRUncharacterized protein. (220 aa)
VPS72Vacuolar protein sorting 72 homolog. (364 aa)
PPP4R2Protein phosphatase 4 regulatory subunit 2. (455 aa)
LOC101978280Polyadenylate-binding protein 1-like 2. (200 aa)
DCP1BDecapping mRNA 1B. (618 aa)
I3N7W8_ICTTRUncharacterized protein; Belongs to the TCP-1 chaperonin family. (202 aa)
PNPT1Polyribonucleotide nucleotidyltransferase 1. (784 aa)
PABPC4LPoly(A) binding protein cytoplasmic 4 like. (372 aa)
TMEM87BTransmembrane protein 87B. (498 aa)
DPH12-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2. (435 aa)
TMEM176BTransmembrane protein 176B. (269 aa)
C19orf54Chromosome 19 open reading frame 54. (350 aa)
EXOSC5Exosome component 5. (235 aa)
PFKLATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily. (780 aa)
EXOSC6Exosome component 6. (272 aa)
DDX60DExD/H-box helicase 60. (1465 aa)
PLXDC1Plexin domain containing 1. (471 aa)
CCT6BChaperonin containing TCP1 subunit 6B. (531 aa)
BTG2BTG anti-proliferation factor 2. (158 aa)
PAMPeptidylglycine alpha-amidating monooxygenase. (979 aa)
Lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
CNOT4CCR4-NOT transcription complex subunit 4. (710 aa)
Tcp1Uncharacterized protein. (556 aa)
ENSSTOP00000024694Uncharacterized protein. (158 aa)
CNOT2CCR4-NOT transcription complex subunit 2. (540 aa)
ENSSTOP00000025355Uncharacterized protein. (127 aa)
ENSSTOP00000025407Uncharacterized protein. (163 aa)
LOC101962934Anti_prolifrtn domain-containing protein. (137 aa)
Exosc8RNase_PH domain-containing protein. (89 aa)
LOC101961139Anti_prolifrtn domain-containing protein. (290 aa)
ZCCHC7Zinc finger CCHC-type containing 7. (582 aa)
CNOT7Uncharacterized protein. (285 aa)
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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