STRINGSTRING
CKL_0044 CKL_0044 leuA1 leuA1 glnA glnA CKL_0322 CKL_0322 CKL_0323 CKL_0323 fhs fhs fchA fchA folD folD pyc pyc CKL_0452 CKL_0452 rex rex crt1 crt1 bcd bcd etfB1 etfB1 etfA1 etfA1 hbd1 hbd1 CKL_0459 CKL_0459 CKL_0460 CKL_0460 idh idh CKL_0633 CKL_0633 CKL_0743 CKL_0743 CKL_0746 CKL_0746 CKL_0765 CKL_0765 fbp fbp CKL_0846 CKL_0846 ppdK ppdK CKL_0973 CKL_0973 CKL_0974 CKL_0974 tal tal CKL_1074 CKL_1074 CKL_1075 CKL_1075 CKL_1076 CKL_1076 CKL_1077 CKL_1077 CKL_1078 CKL_1078 ilvC1 ilvC1 ilvB1 ilvB1 ilvC2 ilvC2 act act pfl pfl deoB deoB glyA glyA CKL_1377 CKL_1377 ldh ldh pta pta ackA ackA gap gap CKL_1498 CKL_1498 CKL_1499 CKL_1499 aad aad ilvH ilvH ilvI ilvI gltD gltD gltB gltB CKL_1654 CKL_1654 CKL_1689 CKL_1689 CKL_1690 CKL_1690 ilvD ilvD nifV1 nifV1 nifV2 nifV2 bfmBC bfmBC lplA lplA gcvPB gcvPB gcvPA gcvPA gcvH gcvH gcvT gcvT CKL_2064 CKL_2064 ilvB2 ilvB2 ilvE2 ilvE2 CKL_2138 CKL_2138 leuB leuB leuD leuD leuC leuC leuA2 leuA2 CKL_2209 CKL_2209 lpdA lpdA pdhC pdhC pdhB pdhB pdhA pdhA lipA2 lipA2 lipB lipB CKL_2400 CKL_2400 CKL_2404 CKL_2404 speB speB maeB maeB crt2 crt2 pck pck deoC deoC hbd2 hbd2 CKL_2967 CKL_2967 porB porB porA porA porD porD porC porC CKL_3000 CKL_3000 CKL_3001 CKL_3001 CKL_3002 CKL_3002 4hbD 4hbD sucD sucD cat1 cat1 CKL_3022 CKL_3022 gdh gdh gabT gabT CKL_3337 CKL_3337 eno eno gpmI gpmI tpiA tpiA pgk pgk CKL_3382 CKL_3382 CKL_3419 CKL_3419 CKL_3425 CKL_3425 dhaT2 dhaT2 CKL_3437 CKL_3437 pgi pgi CKL_3515 CKL_3515 etfA2 etfA2 etfB2 etfB2 pyk pyk pfk1 pfk1 tktB tktB tktA tktA fba fba ilvE3 ilvE3 thlA1 thlA1 thlA2 thlA2 thlA3 thlA3 nrdG nrdG
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
CKL_0044Predicted citrate synthase; Belongs to the citrate synthase family. (449 aa)
leuA1LeuA1; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. (553 aa)
glnAGlnA; Predicted glutamine synthetase. (632 aa)
CKL_0322Predicted glycyl radical enzyme activator. (258 aa)
CKL_0323Predicted glycyl radical enzyme. (800 aa)
fhsFhs; Formate-tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. (558 aa)
fchAFchA; Methenyltetrahydrofolate cyclohydrolase. (210 aa)
folDFolD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (284 aa)
pycPyc; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1146 aa)
CKL_0452Predicted ABC transporter with duplicated ATPase domain. (636 aa)
rexTranscriptional regulator; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (210 aa)
crt1Crt1; 3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
bcdBcd; butyryl-CoA dehydrogenase. (379 aa)
etfB1EtfB1; Electron transfer flavoprotein beta subunit. (259 aa)
etfA1EtfA1; Electron transfer flavoprotein alpha subunit. (334 aa)
hbd1Hbd1; 3-hydroxybutyryl-CoA dehydrogenase. (282 aa)
CKL_0459Predicted dihydroorotate dehydrogenase electron transfer subunit. (297 aa)
CKL_0460Glutamate synthase-related protein. (463 aa)
idhIdh; Isocitrate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (401 aa)
CKL_0633Acyl-CoA dehydrogenase, short-chain specific. (562 aa)
CKL_0743Predicted enoate reductase. (667 aa)
CKL_0746Predicted enoate reductase. (681 aa)
CKL_0765Conserved hypothetical protein. (547 aa)
fbpFbp; Fructose-1,6-bisphosphatase. (666 aa)
CKL_0846Predicted microcompartment protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (220 aa)
ppdKPpdK; Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family. (880 aa)
CKL_09732-isopropylmalate synthase-related protein; Catalyzes the condensation of the acetyl group of acetyl-CoA with oxaloacetate to form citrate. This enzyme is highly Re-face stereospecific with respect to the C-2 of oxaloacetate. (453 aa)
CKL_0974Aconitase-related protein. (641 aa)
talTal; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (215 aa)
CKL_1074Acetaldehyde dehydrogenase. (491 aa)
CKL_1075Predicted alcohol dehydrogenase. (404 aa)
CKL_1076Acetaldehyde dehydrogenase. (491 aa)
CKL_1077Predicted alcohol dehydrogenase. (435 aa)
CKL_1078Predicted alcohol dehydrogenase. (404 aa)
ilvC1IlvC1; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (333 aa)
ilvB1IlvB1; Predicted acetolactate synthase, large subunit. (553 aa)
ilvC2IlvC2; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (333 aa)
actAct; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family. (242 aa)
pflPfl; Pyruvate formate-lyase. (744 aa)
deoBDeoB; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (389 aa)
glyAGlyA; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (411 aa)
CKL_1377Pentose phosphate epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (216 aa)
ldhHypothetical protein; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. (315 aa)
ptaPta; Phosphotransacetylase. (333 aa)
ackAAckA; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (405 aa)
gapGap; Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (351 aa)
CKL_1498FixC protein. (209 aa)
CKL_1499FixX-related protein. (97 aa)
aadAad; Bicunctional aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. (876 aa)
ilvHIlvH; Acetolactate synthase, small subunit. (165 aa)
ilvIIlvI; Acetolactate synthase, large subunit. (536 aa)
gltDGltD; Glutamate synthase, small subunit. (477 aa)
gltBGltB; Glutamate synthase, large subunit. (1509 aa)
CKL_1654Phosphoenolpyruvate synthase-related protein. (772 aa)
CKL_1689Predicted enoate reductase. (674 aa)
CKL_1690Predicted NADH oxidase. (141 aa)
ilvDIlvD; Predicted dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. (556 aa)
nifV1NifV1; Homocitrate synthase, alpha subunit; Belongs to the alpha-IPM synthase/homocitrate synthase family. (269 aa)
nifV2NifV2; Homocitrate synthase, omega subunit. (353 aa)
bfmBCBfmBC; Dihydrolipoyl dehydrogenase. (455 aa)
lplALplA; Lipoate-protein ligase A. (330 aa)
gcvPBGcvPB; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. (487 aa)
gcvPAGcvPA; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (439 aa)
gcvHGcvH; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (126 aa)
gcvTGcvT; The glycine cleavage system catalyzes the degradation of glycine. (362 aa)
CKL_2064Hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (426 aa)
ilvB2IlvB2; Acetolactate synthase, large subunit. (569 aa)
ilvE2IlvE2; Predicted branched-chain-amino-acid aminotransferase. (277 aa)
CKL_2138Pyruvate-flavodoxin oxidoreductase. (1169 aa)
leuBLeuB; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. (354 aa)
leuDLeuD; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 2 subfamily. (164 aa)
leuCLeuC; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (420 aa)
leuA2LeuA2; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (514 aa)
CKL_2209Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (474 aa)
lpdALpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvatedehydrogenase complex). (576 aa)
pdhCPdhC; Dihydrolipoyllysine-residue acetyltransferase (E2 component of pyruvatedehydrogenase complex). (444 aa)
pdhBPdhB; Pyruvate dehydrogenase E1 component, beta subunit. (323 aa)
pdhAPdhA; Pyruvate dehydrogenase E1 component, alpha subunit. (333 aa)
lipA2LipA2; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (287 aa)
lipBLipB; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. (233 aa)
CKL_2400Conserved hypothetical protein. (107 aa)
CKL_2404Predicted aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (452 aa)
speBSpeB; Agmatinase; Belongs to the arginase family. (315 aa)
maeBMaeB; NADP-dependent malic enzyme. (410 aa)
crt2Crt2; 3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
pckPck; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (528 aa)
deoCDeoC; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (218 aa)
hbd2Hbd2; Predicted 3-hydroxybutyryl-CoA dehydrogenase. (319 aa)
CKL_2967Predicted iron containing alcohol dehydrogenase. (390 aa)
porBPorB; Pyruvate:ferredoxin oxidoreductase. (310 aa)
porAPorA; Pyruvate:ferredoxin oxidoreductase. (393 aa)
porDPorD; Pyruvate:ferredoxin oxidoreductase. (99 aa)
porCPorC; Pyruvate:ferredoxin oxidoreductase. (191 aa)
CKL_3000Predicted iron containing alcohol dehydrogenase. (390 aa)
CKL_3001Predicted glycyl radical enzyme activator. (301 aa)
CKL_3002Predicted glycyl radical enzyme. (789 aa)
4hbD4hbD; NAD-dependent 4-hydroxybutyrate dehydrogenase; Belongs to the iron-containing alcohol dehydrogenase family. (371 aa)
sucDSucD; Catalyzes the reduction of succinate semialdehyde to succinyl-CoA. The enzyme is specific for succinate semialdehyde and succinyl-CoA, and only shows low activity with palmitoyl-CoA. There is no activity with NAD(+) as cosubstrate. (453 aa)
cat1Cat1; Forms succinyl-CoA from succinate and acetyl-CoA; Belongs to the acetyl-CoA hydrolase/transferase family. (538 aa)
CKL_3022Predicted acyl dehydratase. (139 aa)
gdhGdh; NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (443 aa)
gabTGabT; 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (458 aa)
CKL_3337Automatic annotation. (1172 aa)
enoHypothetical protein; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (430 aa)
gpmIHypothetical protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (509 aa)
tpiAHypothetical protein; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (248 aa)
pgkHypothetical protein; Belongs to the phosphoglycerate kinase family. (398 aa)
CKL_3382Hypothetical protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (335 aa)
CKL_3419Hypothetical protein. (328 aa)
CKL_3425Predicted iron containing alcohol dehydrogenase. (390 aa)
dhaT2DhaT2; 1,3-propanediol dehydrogenase. (381 aa)
CKL_3437Predicted enoate reductase. (655 aa)
pgiPgi; Glucose-6-phosphate isomerase; Belongs to the GPI family. (449 aa)
CKL_3515Predicted FAD/FMN-containing dehydrogenase. (468 aa)
etfA2EtfA2; Electron transfer flavoprotein, alpha subunit. (332 aa)
etfB2EtfB2; Electron transfer flavoprotein, beta subunit. (267 aa)
pykPyk; Pyruvate kinase; Belongs to the pyruvate kinase family. (585 aa)
pfk1Pfk1; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (318 aa)
tktBTktB; Predicted transketolase, subunit B. (313 aa)
tktATktA; Predicted transketolase, subunit A. (274 aa)
fbaFba; Fructose-bisphosphate aldolase. (313 aa)
ilvE3IlvE3; Branched-chain amino acid aminotransferase. (344 aa)
thlA1ThlA1; acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
thlA2ThlA2; acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
thlA3ThlA3; acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
nrdGNrdG; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. (174 aa)
Your Current Organism:
Clostridium kluyveri
NCBI taxonomy Id: 431943
Other names: C. kluyveri DSM 555, Clostridium kluyveri DSM 555, Clostridium kluyveri str. DSM 555, Clostridium kluyveri strain DSM 555
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