(21 nodes) Mixed, incl. EGF-like domain, and Small GTPase superfamily, ARF/SAR type network (Toxoplasma gondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN1205_093970	Transmembrane amino acid transporter. (2130 aa)
	BN1205_013540	EGF family domain-containing protein. (1148 aa)
	BN1205_081285	Putative transmembrane protein. (289 aa)
	BN1205_046625	Uncharacterized protein. (1476 aa)
	TGVEG_267045	Ras family protein. (194 aa)
	TGVEG_286740	Microneme-like protein. (759 aa)
	BN1205_013130	Sec16 Sec23-binding domain protein. (2142 aa)
	BN1205_017000	ADP-ribosylation factor, putative. (222 aa)
	BN1205_071860	ADP-ribosylation factor domain-containing protein; Belongs to the small GTPase superfamily. Arf family. (180 aa)
	BN1205_106220	Putative transmembrane protein. (288 aa)
	TGVEG_263220	Rhoptry kinase family protein ROP21. (750 aa)
	BN1205_065830	Uncharacterized protein. (1126 aa)
	BN1205_045170	Subtilisin SUB1. (817 aa)
	TGVEG_235183	PAN domain-containing protein. (2869 aa)
	BN1205_068295	Putative transmembrane protein. (1117 aa)
	TGVEG_202285	EGF family domain-containing protein. (360 aa)
	BN1205_024640	Uncharacterized protein. (1528 aa)
	BN1205_036730	Uncharacterized protein. (1175 aa)
	BN1205_042170	Tyrosine kinase-like (TKL) protein. (3571 aa)
	BN1205_076830	Uncharacterized protein. (1481 aa)
	TGVEG_235187	Putative GCC2 and GCC3 domain protein. (2083 aa)

Your Current Organism:

Toxoplasma gondii

NCBI taxonomy Id: 432359
Other names: T. gondii VEG, Toxoplasma gondii VEG

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1205_013130	BN1205_013540	B6KQW9	A0A125YRE7	Sec16 Sec23-binding domain protein.	EGF family domain-containing protein.	0.908
BN1205_013130	BN1205_017000	B6KQW9	B9PHH9	Sec16 Sec23-binding domain protein.	ADP-ribosylation factor, putative.	0.622
BN1205_013130	BN1205_024640	B6KQW9	V4ZPQ9	Sec16 Sec23-binding domain protein.	Uncharacterized protein.	0.643
BN1205_013130	BN1205_036730	B6KQW9	V5AWU2	Sec16 Sec23-binding domain protein.	Uncharacterized protein.	0.643
BN1205_013130	BN1205_042170	B6KQW9	V5AXL6	Sec16 Sec23-binding domain protein.	Tyrosine kinase-like (TKL) protein.	0.666
BN1205_013130	BN1205_045170	B6KQW9	V4YYL6	Sec16 Sec23-binding domain protein.	Subtilisin SUB1.	0.663
BN1205_013130	BN1205_065830	B6KQW9	V4YWC5	Sec16 Sec23-binding domain protein.	Uncharacterized protein.	0.660
BN1205_013130	BN1205_068295	B6KQW9	V4ZFX8	Sec16 Sec23-binding domain protein.	Putative transmembrane protein.	0.980
BN1205_013130	BN1205_071860	B6KQW9	B9PLN4	Sec16 Sec23-binding domain protein.	ADP-ribosylation factor domain-containing protein; Belongs to the small GTPase superfamily. Arf family.	0.615
BN1205_013130	BN1205_076830	B6KQW9	V5AXR6	Sec16 Sec23-binding domain protein.	Uncharacterized protein.	0.643
BN1205_013130	BN1205_081285	B6KQW9	A0A125YTS5	Sec16 Sec23-binding domain protein.	Putative transmembrane protein.	0.744
BN1205_013130	BN1205_093970	B6KQW9	A0A125YHB9	Sec16 Sec23-binding domain protein.	Transmembrane amino acid transporter.	0.643
BN1205_013130	BN1205_106220	B6KQW9	B9PZ47	Sec16 Sec23-binding domain protein.	Putative transmembrane protein.	0.766
BN1205_013130	TGVEG_202285	B6KQW9	V4ZGL0	Sec16 Sec23-binding domain protein.	EGF family domain-containing protein.	0.932
BN1205_013130	TGVEG_235183	B6KQW9	V4ZEU3	Sec16 Sec23-binding domain protein.	PAN domain-containing protein.	0.908
BN1205_013130	TGVEG_235187	B6KQW9	V5B572	Sec16 Sec23-binding domain protein.	Putative GCC2 and GCC3 domain protein.	0.908
BN1205_013130	TGVEG_267045	B6KQW9	A0A125YW57	Sec16 Sec23-binding domain protein.	Ras family protein.	0.624
BN1205_013130	TGVEG_286740	B6KQW9	A0A125YY55	Sec16 Sec23-binding domain protein.	Microneme-like protein.	0.908
BN1205_013540	BN1205_013130	A0A125YRE7	B6KQW9	EGF family domain-containing protein.	Sec16 Sec23-binding domain protein.	0.908
BN1205_013540	BN1205_017000	A0A125YRE7	B9PHH9	EGF family domain-containing protein.	ADP-ribosylation factor, putative.	0.609