(7 nodes) Mixed, incl. G protein-coupled receptor activity, and STIMATE family network (Toxoplasma gondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TGVEG_312190	Uncharacterized protein. (2275 aa)
	BN1205_081260	Uncharacterized protein. (425 aa)
	BN1205_016260	Outer dynein arm docking complex protein ODA1,putative. (547 aa)
	TGVEG_260390	Uncharacterized protein. (1717 aa)
	TGVEG_237210	Tyrosine kinase-like (TKL) protein. (935 aa)
	TGVEG_227320	Uncharacterized protein. (1229 aa)
	TGVEG_357130	WD domain, G-beta repeat protein. (394 aa)

Your Current Organism:

Toxoplasma gondii

NCBI taxonomy Id: 432359
Other names: T. gondii VEG, Toxoplasma gondii VEG

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1205_016260	BN1205_081260	B9PHC5	B6KLN6	Outer dynein arm docking complex protein ODA1,putative.	Uncharacterized protein.	0.666
BN1205_016260	TGVEG_227320	B9PHC5	V4ZFP6	Outer dynein arm docking complex protein ODA1,putative.	Uncharacterized protein.	0.791
BN1205_016260	TGVEG_237210	B9PHC5	V4ZFC9	Outer dynein arm docking complex protein ODA1,putative.	Tyrosine kinase-like (TKL) protein.	0.623
BN1205_016260	TGVEG_260390	B9PHC5	V4YV99	Outer dynein arm docking complex protein ODA1,putative.	Uncharacterized protein.	0.956
BN1205_016260	TGVEG_312190	B9PHC5	A0A125YLF8	Outer dynein arm docking complex protein ODA1,putative.	Uncharacterized protein.	0.956
BN1205_016260	TGVEG_357130	B9PHC5	V5B3I1	Outer dynein arm docking complex protein ODA1,putative.	WD domain, G-beta repeat protein.	0.837
BN1205_081260	BN1205_016260	B6KLN6	B9PHC5	Uncharacterized protein.	Outer dynein arm docking complex protein ODA1,putative.	0.666
BN1205_081260	TGVEG_227320	B6KLN6	V4ZFP6	Uncharacterized protein.	Uncharacterized protein.	0.644
BN1205_081260	TGVEG_237210	B6KLN6	V4ZFC9	Uncharacterized protein.	Tyrosine kinase-like (TKL) protein.	0.641
BN1205_081260	TGVEG_260390	B6KLN6	V4YV99	Uncharacterized protein.	Uncharacterized protein.	0.978
BN1205_081260	TGVEG_312190	B6KLN6	A0A125YLF8	Uncharacterized protein.	Uncharacterized protein.	0.978
BN1205_081260	TGVEG_357130	B6KLN6	V5B3I1	Uncharacterized protein.	WD domain, G-beta repeat protein.	0.647
TGVEG_227320	BN1205_016260	V4ZFP6	B9PHC5	Uncharacterized protein.	Outer dynein arm docking complex protein ODA1,putative.	0.791
TGVEG_227320	BN1205_081260	V4ZFP6	B6KLN6	Uncharacterized protein.	Uncharacterized protein.	0.644
TGVEG_227320	TGVEG_237210	V4ZFP6	V4ZFC9	Uncharacterized protein.	Tyrosine kinase-like (TKL) protein.	0.533
TGVEG_227320	TGVEG_260390	V4ZFP6	V4YV99	Uncharacterized protein.	Uncharacterized protein.	0.984
TGVEG_227320	TGVEG_312190	V4ZFP6	A0A125YLF8	Uncharacterized protein.	Uncharacterized protein.	0.984
TGVEG_227320	TGVEG_357130	V4ZFP6	V5B3I1	Uncharacterized protein.	WD domain, G-beta repeat protein.	0.999
TGVEG_237210	BN1205_016260	V4ZFC9	B9PHC5	Tyrosine kinase-like (TKL) protein.	Outer dynein arm docking complex protein ODA1,putative.	0.623
TGVEG_237210	BN1205_081260	V4ZFC9	B6KLN6	Tyrosine kinase-like (TKL) protein.	Uncharacterized protein.	0.641