(12 nodes) Nuclear exosome (RNase complex), and Sas10/Utp3/C1D network (Toxoplasma gondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TGVEG_286550	Putative 3' exoribonuclease family domain 1 protein. (223 aa)
	BN1205_046610	3' exoribonuclease family, domain 1 domain-containing protein. (344 aa)
	TGVEG_231040	3' exoribonuclease family, domain 1 domain-containing protein. (341 aa)
	TGVEG_312400	Putative exosomal 3'-5' exoribonuclease complex subunit. (458 aa)
	BN1205_065700	Exosome complex exonuclease, putative. (356 aa)
	BN1205_004940	3'-5' exonuclease domain-containing protein. (1353 aa)
	BN1205_045800	3'-5' exoribonuclease csl4, putative. (269 aa)
	BN1205_034540	Putative Superkiller viralicidic activity 2 family 2. (1206 aa)
	BN1205_010850	3' exoribonuclease family, domain 1 domain-containing protein. (303 aa)
	BN1205_056030	Nuclear DNA-binding protein, putative. (268 aa)
	TGVEG_213930	3' exoribonuclease family, domain 1 domain-containing protein. (503 aa)
	BN1205_073440	Mitotic control protein dis3, putative; Belongs to the RNR ribonuclease family. (1150 aa)

Your Current Organism:

Toxoplasma gondii

NCBI taxonomy Id: 432359
Other names: T. gondii VEG, Toxoplasma gondii VEG

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1205_004940	BN1205_010850	B9QDK9	B9QI93	3'-5' exonuclease domain-containing protein.	3' exoribonuclease family, domain 1 domain-containing protein.	0.951
BN1205_004940	BN1205_034540	B9QDK9	B9QGC5	3'-5' exonuclease domain-containing protein.	Putative Superkiller viralicidic activity 2 family 2.	0.999
BN1205_004940	BN1205_045800	B9QDK9	B9QFL0	3'-5' exonuclease domain-containing protein.	3'-5' exoribonuclease csl4, putative.	0.999
BN1205_004940	BN1205_046610	B9QDK9	A0A125YQ07	3'-5' exonuclease domain-containing protein.	3' exoribonuclease family, domain 1 domain-containing protein.	0.999
BN1205_004940	BN1205_056030	B9QDK9	B9QIR2	3'-5' exonuclease domain-containing protein.	Nuclear DNA-binding protein, putative.	0.999
BN1205_004940	BN1205_065700	B9QDK9	B9Q7M0	3'-5' exonuclease domain-containing protein.	Exosome complex exonuclease, putative.	0.999
BN1205_004940	BN1205_073440	B9QDK9	V4YVE3	3'-5' exonuclease domain-containing protein.	Mitotic control protein dis3, putative; Belongs to the RNR ribonuclease family.	0.965
BN1205_004940	TGVEG_213930	B9QDK9	V4YRB2	3'-5' exonuclease domain-containing protein.	3' exoribonuclease family, domain 1 domain-containing protein.	0.999
BN1205_004940	TGVEG_231040	B9QDK9	A0A125YV33	3'-5' exonuclease domain-containing protein.	3' exoribonuclease family, domain 1 domain-containing protein.	0.951
BN1205_004940	TGVEG_286550	B9QDK9	A0A125YJ89	3'-5' exonuclease domain-containing protein.	Putative 3' exoribonuclease family domain 1 protein.	0.999
BN1205_004940	TGVEG_312400	B9QDK9	A0A125YXU0	3'-5' exonuclease domain-containing protein.	Putative exosomal 3'-5' exoribonuclease complex subunit.	0.999
BN1205_010850	BN1205_004940	B9QI93	B9QDK9	3' exoribonuclease family, domain 1 domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.951
BN1205_010850	BN1205_034540	B9QI93	B9QGC5	3' exoribonuclease family, domain 1 domain-containing protein.	Putative Superkiller viralicidic activity 2 family 2.	0.951
BN1205_010850	BN1205_045800	B9QI93	B9QFL0	3' exoribonuclease family, domain 1 domain-containing protein.	3'-5' exoribonuclease csl4, putative.	0.956
BN1205_010850	BN1205_046610	B9QI93	A0A125YQ07	3' exoribonuclease family, domain 1 domain-containing protein.	3' exoribonuclease family, domain 1 domain-containing protein.	0.972
BN1205_010850	BN1205_056030	B9QI93	B9QIR2	3' exoribonuclease family, domain 1 domain-containing protein.	Nuclear DNA-binding protein, putative.	0.948
BN1205_010850	BN1205_065700	B9QI93	B9Q7M0	3' exoribonuclease family, domain 1 domain-containing protein.	Exosome complex exonuclease, putative.	0.961
BN1205_010850	BN1205_073440	B9QI93	V4YVE3	3' exoribonuclease family, domain 1 domain-containing protein.	Mitotic control protein dis3, putative; Belongs to the RNR ribonuclease family.	0.873
BN1205_010850	TGVEG_213930	B9QI93	V4YRB2	3' exoribonuclease family, domain 1 domain-containing protein.	3' exoribonuclease family, domain 1 domain-containing protein.	0.954
BN1205_010850	TGVEG_231040	B9QI93	A0A125YV33	3' exoribonuclease family, domain 1 domain-containing protein.	3' exoribonuclease family, domain 1 domain-containing protein.	0.604