(22 nodes) Autophagy network (Toxoplasma gondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN1205_021130	Uncharacterized protein. (675 aa)
	BN1205_101260	ULK kinase. (2097 aa)
	TGVEG_310190	PIK3R4 kinase-related protein (Incomplete catalytic triad). (3028 aa)
	BN1205_090670	ULK kinase; Belongs to the protein kinase superfamily. (500 aa)
	BN1205_000510	Uncharacterized protein. (477 aa)
	TGVEG_229690	Putative autophagy-related protein 7 atg7. (1332 aa)
	TGVEG_230860	Autophagy protein 5; Involved in autophagic vesicle formation. (903 aa)
	BN1205_095690	FUN14 family domain-containing protein. (184 aa)
	BN1205_057390	Autophagy-related protein. (124 aa)
	BN1205_053330	Phosphoglycerate mutase family protein. (514 aa)
	BN1205_017600	Zinc finger, ZZ type domain-containing protein. (520 aa)
	BN1205_061200	Autophagy-related protein 3. (398 aa)
	BN1205_052020	Autophagy protein Apg6. (644 aa)
	BN1205_087360	WD-40 repeat protein, putative. (554 aa)
	TGVEG_244370	Putative TDC1. (584 aa)
	BN1205_030100	Phosphatidylinositol 3-kinase, putative; Belongs to the PI3/PI4-kinase family. (2983 aa)
	TGVEG_242700	Uncharacterized protein. (2272 aa)
	TGVEG_304630	ATG C terminal domain-containing protein. (8079 aa)
	BN1205_073750	Autophagy protein APG9, putative. (1654 aa)
	BN1205_082360	WD domain, G-beta repeat-containing protein. (656 aa)
	BN1205_043150	Putative autophagy-related cysteine peptidase atg4. (3747 aa)
	BN1205_059330	Ubiquitin-like protein ATG12. (681 aa)

Your Current Organism:

Toxoplasma gondii

NCBI taxonomy Id: 432359
Other names: T. gondii VEG, Toxoplasma gondii VEG

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1205_000510	BN1205_017600	B6KHV0	B9Q5Z7	Uncharacterized protein.	Zinc finger, ZZ type domain-containing protein.	0.539
BN1205_000510	BN1205_052020	B6KHV0	B9QH65	Uncharacterized protein.	Autophagy protein Apg6.	0.456
BN1205_000510	BN1205_057390	B6KHV0	B9PWU8	Uncharacterized protein.	Autophagy-related protein.	0.729
BN1205_017600	BN1205_000510	B9Q5Z7	B6KHV0	Zinc finger, ZZ type domain-containing protein.	Uncharacterized protein.	0.539
BN1205_017600	BN1205_021130	B9Q5Z7	A0A0F7UXY9	Zinc finger, ZZ type domain-containing protein.	Uncharacterized protein.	0.544
BN1205_017600	BN1205_030100	B9Q5Z7	V4ZB80	Zinc finger, ZZ type domain-containing protein.	Phosphatidylinositol 3-kinase, putative; Belongs to the PI3/PI4-kinase family.	0.700
BN1205_017600	BN1205_043150	B9Q5Z7	V4ZM71	Zinc finger, ZZ type domain-containing protein.	Putative autophagy-related cysteine peptidase atg4.	0.717
BN1205_017600	BN1205_052020	B9Q5Z7	B9QH65	Zinc finger, ZZ type domain-containing protein.	Autophagy protein Apg6.	0.754
BN1205_017600	BN1205_057390	B9Q5Z7	B9PWU8	Zinc finger, ZZ type domain-containing protein.	Autophagy-related protein.	0.999
BN1205_017600	BN1205_059330	B9Q5Z7	V5B115	Zinc finger, ZZ type domain-containing protein.	Ubiquitin-like protein ATG12.	0.834
BN1205_017600	BN1205_061200	B9Q5Z7	B9Q737	Zinc finger, ZZ type domain-containing protein.	Autophagy-related protein 3.	0.740
BN1205_017600	BN1205_073750	B9Q5Z7	V4ZIF8	Zinc finger, ZZ type domain-containing protein.	Autophagy protein APG9, putative.	0.753
BN1205_017600	BN1205_090670	B9Q5Z7	B6KFF1	Zinc finger, ZZ type domain-containing protein.	ULK kinase; Belongs to the protein kinase superfamily.	0.653
BN1205_017600	BN1205_101260	B9Q5Z7	A0A125YH25	Zinc finger, ZZ type domain-containing protein.	ULK kinase.	0.653
BN1205_017600	TGVEG_229690	B9Q5Z7	B6KJ80	Zinc finger, ZZ type domain-containing protein.	Putative autophagy-related protein 7 atg7.	0.893
BN1205_017600	TGVEG_230860	B9Q5Z7	B6KJG4	Zinc finger, ZZ type domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.911
BN1205_017600	TGVEG_242700	B9Q5Z7	V4ZGQ4	Zinc finger, ZZ type domain-containing protein.	Uncharacterized protein.	0.564
BN1205_017600	TGVEG_304630	B9Q5Z7	V4ZHE1	Zinc finger, ZZ type domain-containing protein.	ATG C terminal domain-containing protein.	0.547
BN1205_017600	TGVEG_310190	B9Q5Z7	A0A125YYI8	Zinc finger, ZZ type domain-containing protein.	PIK3R4 kinase-related protein (Incomplete catalytic triad).	0.483
BN1205_021130	BN1205_017600	A0A0F7UXY9	B9Q5Z7	Uncharacterized protein.	Zinc finger, ZZ type domain-containing protein.	0.544