(22 nodes) Oxidoreductase activity, acting on the CH-CH group of donors network (Toxoplasma gondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN1205_041450	3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2, putative. (324 aa)
	BN1205_100610	Acyl-CoA dehydrogenase, middle domain-containing protein. (1016 aa)
	TGVEG_231900	Acyl-CoA dehydrogenase domain-containing protein. (454 aa)
	BN1205_020000	Protoporphyrinogen oxidase, putative. (1028 aa)
	BN1205_103510	Dihydrodipicolinate reductase, putative. (324 aa)
	TGVEG_285240	3-oxo-5-alpha-steroid 4-dehydrogenase. (347 aa)
	BN1205_030620	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (342 aa)
	BN1205_030210	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (669 aa)
	BN1205_086120	tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family. (394 aa)
	BN1205_068860	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]. (1220 aa)
	BN1205_004300	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (696 aa)
	BN1205_046550	Dihydrouridine synthase domain-containing protein. (544 aa)
	BN1205_008750	Putative dihydroorotate dehydrogenase reveal. (592 aa)
	BN1205_080170	Dihydrouridine synthase domain-containing protein. (653 aa)
	TGVEG_255680	YbaK/proline-tRNA ligase associated domain-containing protein. (262 aa)
	BN1205_041360	Glutaredoxin domain containing protein; Belongs to the GST superfamily. (540 aa)
	TGVEG_266270	Short-chain-acyl-CoA dehydrogenase. (527 aa)
	TGVEG_272570	Dihydrouridine synthase (Dus) protein. (918 aa)
	BN1205_053540	Coproporphyrinogen oxidase, putative. (364 aa)
	TGVEG_289240	DnaJ domain-containing protein. (891 aa)
	TGVEG_272180	3-oxo-5-alpha-steroid 4-dehydrogenase. (534 aa)
	TGVEG_249630	Glutathione S-transferase, N-terminal domain-containing protein. (438 aa)

Your Current Organism:

Toxoplasma gondii

NCBI taxonomy Id: 432359
Other names: T. gondii VEG, Toxoplasma gondii VEG

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1205_004300	BN1205_100610	B9QDG5	A0A125YXD3	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	Acyl-CoA dehydrogenase, middle domain-containing protein.	0.833
BN1205_004300	TGVEG_231900	B9QDG5	B6KJN8	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	Acyl-CoA dehydrogenase domain-containing protein.	0.825
BN1205_004300	TGVEG_266270	B9QDG5	V4ZEC7	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	Short-chain-acyl-CoA dehydrogenase.	0.846
BN1205_004300	TGVEG_289240	B9QDG5	V4ZNE2	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	DnaJ domain-containing protein.	0.803
BN1205_008750	BN1205_030210	B9QHU4	B9PZU5	Putative dihydroorotate dehydrogenase reveal.	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.757
BN1205_008750	BN1205_053540	B9QHU4	V5B2D2	Putative dihydroorotate dehydrogenase reveal.	Coproporphyrinogen oxidase, putative.	0.627
BN1205_020000	BN1205_053540	B9PIE2	V5B2D2	Protoporphyrinogen oxidase, putative.	Coproporphyrinogen oxidase, putative.	0.931
BN1205_030210	BN1205_008750	B9PZU5	B9QHU4	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Putative dihydroorotate dehydrogenase reveal.	0.757
BN1205_030210	BN1205_030620	B9PZU5	B9PZR3	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.999
BN1205_030210	TGVEG_266270	B9PZU5	V4ZEC7	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Short-chain-acyl-CoA dehydrogenase.	0.400
BN1205_030620	BN1205_030210	B9PZR3	B9PZU5	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.999
BN1205_030620	TGVEG_289240	B9PZR3	V4ZNE2	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	DnaJ domain-containing protein.	0.507
BN1205_041450	TGVEG_272180	A0A125YRT9	V4ZLE7	3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2, putative.	3-oxo-5-alpha-steroid 4-dehydrogenase.	0.702
BN1205_053540	BN1205_008750	V5B2D2	B9QHU4	Coproporphyrinogen oxidase, putative.	Putative dihydroorotate dehydrogenase reveal.	0.627
BN1205_053540	BN1205_020000	V5B2D2	B9PIE2	Coproporphyrinogen oxidase, putative.	Protoporphyrinogen oxidase, putative.	0.931
BN1205_068860	BN1205_080170	B9Q8D5	B9QPR1	tRNA-dihydrouridine(47) synthase [NAD(P)(+)].	Dihydrouridine synthase domain-containing protein.	0.456
BN1205_080170	BN1205_068860	B9QPR1	B9Q8D5	Dihydrouridine synthase domain-containing protein.	tRNA-dihydrouridine(47) synthase [NAD(P)(+)].	0.456
BN1205_100610	BN1205_004300	A0A125YXD3	B9QDG5	Acyl-CoA dehydrogenase, middle domain-containing protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.833
BN1205_100610	TGVEG_231900	A0A125YXD3	B6KJN8	Acyl-CoA dehydrogenase, middle domain-containing protein.	Acyl-CoA dehydrogenase domain-containing protein.	0.777
BN1205_100610	TGVEG_266270	A0A125YXD3	V4ZEC7	Acyl-CoA dehydrogenase, middle domain-containing protein.	Short-chain-acyl-CoA dehydrogenase.	0.783