(37 nodes) Cytosolic large ribosomal subunit network (Toxoplasma gondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN1205_023410	60S ribosomal protein L30, putative. (108 aa)
	BN1205_044440	Glycosyltransferase sugar-binding region containing DXD motif protein. (605 aa)
	BN1205_080490	60s ribosomal protein L31, putative. (120 aa)
	BN1205_030320	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	BN1205_062560	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (54 aa)
	BN1205_045780	Ribosomal protein RPL44; Belongs to the eukaryotic ribosomal protein eL42 family. (105 aa)
	BN1205_045200	60S ribosomal protein L8, putative. (260 aa)
	BN1205_082480	60S ribosomal protein L10, putative. (221 aa)
	BN1205_083290	60s ribosomal protein L19, putative. (187 aa)
	BN1205_085260	60s ribosomal protein L13a, putative. (286 aa)
	TGVEG_250810	Ribosomal protein RPL35. (178 aa)
	BN1205_002620	60s ribosomal protein L33-A, putative. (112 aa)
	BN1205_036110	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (101 aa)
	BN1205_092280	Ribosomal protein L37; Binds to the 23S rRNA. (98 aa)
	BN1205_069230	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (205 aa)
	BN1205_068510	Ribosomal protein L34, putative. (134 aa)
	BN1205_068250	60S ribosomal protein L3, putative; Belongs to the universal ribosomal protein uL3 family. (389 aa)
	BN1205_072060	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (183 aa)
	BN1205_074110	60S acidic ribosomal protein P1, putative; Belongs to the eukaryotic ribosomal protein P1/P2 family. (179 aa)
	BN1205_073140	60S ribosomal protein L7a, putative. (276 aa)
	BN1205_094570	Ribosomal protein L22, putative; Belongs to the universal ribosomal protein uL15 family. (147 aa)
	BN1205_093880	Ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL5 family. (175 aa)
	BN1205_093870	60S acidic ribosomal protein P2, putative; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	TGVEG_314810	Ribosomal protein RPL7. (258 aa)
	BN1205_001370	Putative 60S ribosomal protein L7-B. (267 aa)
	BN1205_003390	60S ribosomal protein L26, putative. (141 aa)
	TGVEG_313390	Ribosomal protein RPL6. (282 aa)
	TGVEG_229250B	Ribosomal protein RPL28. (54 aa)
	TGVEG_267060	Ribosomal protein RPL14. (157 aa)
	TGVEG_262690	Ribosomal protein RPL27. (142 aa)
	BN1205_035880	Ribosomal protein RPL23A; Belongs to the universal ribosomal protein uL23 family. (167 aa)
	TGVEG_254620	Ribosomal protein RPL39. (68 aa)
	BN1205_006195	Ribosomal protein L21, putative. (157 aa)
	TGVEG_309120	Ribosomal protein RPL4. (448 aa)
	TGVEG_263050	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (355 aa)
	TGVEG_229250A	Ribosomal protein RPL28. (74 aa)
	BN1205_071330	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (314 aa)

Your Current Organism:

Toxoplasma gondii

NCBI taxonomy Id: 432359
Other names: T. gondii VEG, Toxoplasma gondii VEG

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1205_001370	BN1205_002620	B6KHN2	B9PR43	Putative 60S ribosomal protein L7-B.	60s ribosomal protein L33-A, putative.	0.988
BN1205_001370	BN1205_003390	B6KHN2	B6KH63	Putative 60S ribosomal protein L7-B.	60S ribosomal protein L26, putative.	0.989
BN1205_001370	BN1205_006195	B6KHN2	A0A125YMU1	Putative 60S ribosomal protein L7-B.	Ribosomal protein L21, putative.	0.987
BN1205_001370	BN1205_023410	B6KHN2	B9PGL1	Putative 60S ribosomal protein L7-B.	60S ribosomal protein L30, putative.	0.988
BN1205_001370	BN1205_030320	B6KHN2	B9PZT4	Putative 60S ribosomal protein L7-B.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.987
BN1205_001370	BN1205_035880	B6KHN2	A0A125YU31	Putative 60S ribosomal protein L7-B.	Ribosomal protein RPL23A; Belongs to the universal ribosomal protein uL23 family.	0.991
BN1205_001370	BN1205_036110	B6KHN2	B9PNQ2	Putative 60S ribosomal protein L7-B.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.983
BN1205_001370	BN1205_044440	B6KHN2	V4ZHB4	Putative 60S ribosomal protein L7-B.	Glycosyltransferase sugar-binding region containing DXD motif protein.	0.962
BN1205_001370	BN1205_045200	B6KHN2	B9PU56	Putative 60S ribosomal protein L7-B.	60S ribosomal protein L8, putative.	0.987
BN1205_001370	BN1205_045780	B6KHN2	B9PU99	Putative 60S ribosomal protein L7-B.	Ribosomal protein RPL44; Belongs to the eukaryotic ribosomal protein eL42 family.	0.983
BN1205_001370	BN1205_062560	B6KHN2	B9PWD4	Putative 60S ribosomal protein L7-B.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.985
BN1205_001370	BN1205_068250	B6KHN2	B9PMX8	Putative 60S ribosomal protein L7-B.	60S ribosomal protein L3, putative; Belongs to the universal ribosomal protein uL3 family.	0.989
BN1205_001370	BN1205_068510	B6KHN2	B9PMZ3	Putative 60S ribosomal protein L7-B.	Ribosomal protein L34, putative.	0.984
BN1205_001370	BN1205_069230	B6KHN2	B9PN66	Putative 60S ribosomal protein L7-B.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.986
BN1205_001370	BN1205_071330	B6KHN2	A0A0F7VC17	Putative 60S ribosomal protein L7-B.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.989
BN1205_001370	BN1205_072060	B6KHN2	B9PLQ2	Putative 60S ribosomal protein L7-B.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.984
BN1205_001370	BN1205_073140	B6KHN2	B9PKF7	Putative 60S ribosomal protein L7-B.	60S ribosomal protein L7a, putative.	0.986
BN1205_001370	BN1205_074110	B6KHN2	B9PKQ4	Putative 60S ribosomal protein L7-B.	60S acidic ribosomal protein P1, putative; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.986
BN1205_001370	BN1205_080490	B6KHN2	B9Q1A7	Putative 60S ribosomal protein L7-B.	60s ribosomal protein L31, putative.	0.988
BN1205_001370	BN1205_082480	B6KHN2	B9PTX0	Putative 60S ribosomal protein L7-B.	60S ribosomal protein L10, putative.	0.986