(39 nodes) RNA 3-end processing network (Toxoplasma gondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN1205_061380	Putative ribonuclease z. (1062 aa)
	BN1205_093160	Putative histone hairpin-binding protein. (616 aa)
	BN1205_065700	Exosome complex exonuclease, putative. (356 aa)
	TGVEG_214990	Uncharacterized protein. (3435 aa)
	TGVEG_269175	Uncharacterized protein. (431 aa)
	BN1205_067060	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (778 aa)
	BN1205_109395	Uncharacterized protein. (4969 aa)
	TGVEG_228710	Uncharacterized protein. (1290 aa)
	BN1205_084000	Uncharacterized protein. (940 aa)
	BN1205_065040	CPSF A subunit region protein. (2847 aa)
	BN1205_033020	Poly(A) RNA polymerase protein. (1221 aa)
	BN1205_032680	Cleavage and polyadenylation specificity factor, putative. (1073 aa)
	BN1205_070500	Cleavage and polyadenylation specificity factor subunit 2. (1707 aa)
	TGVEG_210440	Polynucleotide adenylyltransferase. (835 aa)
	BN1205_096350	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (106 aa)
	BN1205_057470	RNA recognition motif-containing protein. (1123 aa)
	TGVEG_213930	3' exoribonuclease family, domain 1 domain-containing protein. (503 aa)
	BN1205_088360	Polynucleotide adenylyltransferase. (1032 aa)
	BN1205_010850	3' exoribonuclease family, domain 1 domain-containing protein. (303 aa)
	TGVEG_221190	Putative mrna cleavage factor family protein. (414 aa)
	BN1205_032080	RNA recognition motif-containing protein. (615 aa)
	BN1205_004940	3'-5' exonuclease domain-containing protein. (1353 aa)
	BN1205_025500	mRNA 3'-end-processing protein RNA14. (1295 aa)
	TGVEG_286550	Putative 3' exoribonuclease family domain 1 protein. (223 aa)
	TGVEG_257800	Polynucleotide adenylyltransferase. (965 aa)
	TGVEG_258590	Putative transmembrane protein. (1292 aa)
	BN1205_013150	Polynucleotide 5'-hydroxyl-kinase. (688 aa)
	TGVEG_315810	tRNA nucleotidyltransferase/poly(A) polymerase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (1114 aa)
	BN1205_046610	3' exoribonuclease family, domain 1 domain-containing protein. (344 aa)
	BN1205_024190	DNA-directed RNA polymerase II, putative. (130 aa)
	TGVEG_231040	3' exoribonuclease family, domain 1 domain-containing protein. (341 aa)
	BN1205_004680	SLBP_RNA_bind domain-containing protein. (614 aa)
	TGVEG_312400	Putative exosomal 3'-5' exoribonuclease complex subunit. (458 aa)
	BN1205_004670	Symplekin tight junction carboxy-terminal protein. (1891 aa)
	BN1205_095540	Fibrillarin, putative. (304 aa)
	BN1205_023110	Helicase, putative. (1779 aa)
	BN1205_107660	RNA polymerase II accessory factor CDC73. (720 aa)
	BN1205_028960	Polynucleotide adenylyltransferase. (2477 aa)
	BN1205_108080	3' exoribonuclease family, domain 1 domain-containing protein. (392 aa)

Your Current Organism:

Toxoplasma gondii

NCBI taxonomy Id: 432359
Other names: T. gondii VEG, Toxoplasma gondii VEG

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1205_004670	BN1205_004680	A0A125YZ13	A0A125YXG4	Symplekin tight junction carboxy-terminal protein.	SLBP_RNA_bind domain-containing protein.	0.414
BN1205_004670	BN1205_013150	A0A125YZ13	A0A125YM11	Symplekin tight junction carboxy-terminal protein.	Polynucleotide 5'-hydroxyl-kinase.	0.822
BN1205_004670	BN1205_025500	A0A125YZ13	A0A0F7UWY9	Symplekin tight junction carboxy-terminal protein.	mRNA 3'-end-processing protein RNA14.	0.999
BN1205_004670	BN1205_032080	A0A125YZ13	B9QGP7	Symplekin tight junction carboxy-terminal protein.	RNA recognition motif-containing protein.	0.959
BN1205_004670	BN1205_032680	A0A125YZ13	V4ZDX5	Symplekin tight junction carboxy-terminal protein.	Cleavage and polyadenylation specificity factor, putative.	0.999
BN1205_004670	BN1205_057470	A0A125YZ13	V4Z4D5	Symplekin tight junction carboxy-terminal protein.	RNA recognition motif-containing protein.	0.959
BN1205_004670	BN1205_065040	A0A125YZ13	V4ZEL7	Symplekin tight junction carboxy-terminal protein.	CPSF A subunit region protein.	0.999
BN1205_004670	BN1205_067060	A0A125YZ13	B9Q7Y5	Symplekin tight junction carboxy-terminal protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.998
BN1205_004670	BN1205_070500	A0A125YZ13	V4Z8X8	Symplekin tight junction carboxy-terminal protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
BN1205_004670	BN1205_093160	A0A125YZ13	B9Q2I0	Symplekin tight junction carboxy-terminal protein.	Putative histone hairpin-binding protein.	0.414
BN1205_004670	BN1205_107660	A0A125YZ13	B6KRB0	Symplekin tight junction carboxy-terminal protein.	RNA polymerase II accessory factor CDC73.	0.691
BN1205_004670	TGVEG_221190	A0A125YZ13	B9QH49	Symplekin tight junction carboxy-terminal protein.	Putative mrna cleavage factor family protein.	0.848
BN1205_004670	TGVEG_228710	A0A125YZ13	V4ZKI8	Symplekin tight junction carboxy-terminal protein.	Uncharacterized protein.	0.903
BN1205_004680	BN1205_004670	A0A125YXG4	A0A125YZ13	SLBP_RNA_bind domain-containing protein.	Symplekin tight junction carboxy-terminal protein.	0.414
BN1205_004680	BN1205_032680	A0A125YXG4	V4ZDX5	SLBP_RNA_bind domain-containing protein.	Cleavage and polyadenylation specificity factor, putative.	0.464
BN1205_004680	BN1205_070500	A0A125YXG4	V4Z8X8	SLBP_RNA_bind domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.406
BN1205_004940	BN1205_010850	B9QDK9	B9QI93	3'-5' exonuclease domain-containing protein.	3' exoribonuclease family, domain 1 domain-containing protein.	0.951
BN1205_004940	BN1205_025500	B9QDK9	A0A0F7UWY9	3'-5' exonuclease domain-containing protein.	mRNA 3'-end-processing protein RNA14.	0.507
BN1205_004940	BN1205_032080	B9QDK9	B9QGP7	3'-5' exonuclease domain-containing protein.	RNA recognition motif-containing protein.	0.421
BN1205_004940	BN1205_033020	B9QDK9	V4ZDY3	3'-5' exonuclease domain-containing protein.	Poly(A) RNA polymerase protein.	0.652