(24 nodes) Cytosolic large ribosomal subunit network (Toxoplasma gondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN1205_007590	Ribosomal protein RPL37A. (96 aa)
	TGVEG_229250A	Ribosomal protein RPL28. (74 aa)
	TGVEG_309120	Ribosomal protein RPL4. (448 aa)
	BN1205_006195	Ribosomal protein L21, putative. (157 aa)
	TGVEG_254620	Ribosomal protein RPL39. (68 aa)
	BN1205_035880	Ribosomal protein RPL23A; Belongs to the universal ribosomal protein uL23 family. (167 aa)
	TGVEG_262690	Ribosomal protein RPL27. (142 aa)
	TGVEG_229250B	Ribosomal protein RPL28. (54 aa)
	BN1205_108820	Ribosomal protein L32, putative. (134 aa)
	BN1205_023410	60S ribosomal protein L30, putative. (108 aa)
	BN1205_024500	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (84 aa)
	BN1205_094570	Ribosomal protein L22, putative; Belongs to the universal ribosomal protein uL15 family. (147 aa)
	BN1205_068250	60S ribosomal protein L3, putative; Belongs to the universal ribosomal protein uL3 family. (389 aa)
	BN1205_068510	Ribosomal protein L34, putative. (134 aa)
	BN1205_069230	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (205 aa)
	BN1205_092280	Ribosomal protein L37; Binds to the 23S rRNA. (98 aa)
	BN1205_036110	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (101 aa)
	BN1205_002620	60s ribosomal protein L33-A, putative. (112 aa)
	BN1205_083510	Ubiquitin / ribosomal protein CEP52 fusion protein, putative. (129 aa)
	BN1205_083290	60s ribosomal protein L19, putative. (187 aa)
	BN1205_082480	60S ribosomal protein L10, putative. (221 aa)
	BN1205_045200	60S ribosomal protein L8, putative. (260 aa)
	BN1205_062560	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (54 aa)
	BN1205_080490	60s ribosomal protein L31, putative. (120 aa)

Your Current Organism:

Toxoplasma gondii

NCBI taxonomy Id: 432359
Other names: T. gondii VEG, Toxoplasma gondii VEG

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1205_002620	BN1205_006195	B9PR43	A0A125YMU1	60s ribosomal protein L33-A, putative.	Ribosomal protein L21, putative.	0.999
BN1205_002620	BN1205_007590	B9PR43	A0A0F7VBJ8	60s ribosomal protein L33-A, putative.	Ribosomal protein RPL37A.	0.999
BN1205_002620	BN1205_023410	B9PR43	B9PGL1	60s ribosomal protein L33-A, putative.	60S ribosomal protein L30, putative.	0.999
BN1205_002620	BN1205_024500	B9PR43	B9PGY7	60s ribosomal protein L33-A, putative.	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999
BN1205_002620	BN1205_035880	B9PR43	A0A125YU31	60s ribosomal protein L33-A, putative.	Ribosomal protein RPL23A; Belongs to the universal ribosomal protein uL23 family.	0.999
BN1205_002620	BN1205_036110	B9PR43	B9PNQ2	60s ribosomal protein L33-A, putative.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
BN1205_002620	BN1205_045200	B9PR43	B9PU56	60s ribosomal protein L33-A, putative.	60S ribosomal protein L8, putative.	0.999
BN1205_002620	BN1205_062560	B9PR43	B9PWD4	60s ribosomal protein L33-A, putative.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
BN1205_002620	BN1205_068250	B9PR43	B9PMX8	60s ribosomal protein L33-A, putative.	60S ribosomal protein L3, putative; Belongs to the universal ribosomal protein uL3 family.	0.999
BN1205_002620	BN1205_068510	B9PR43	B9PMZ3	60s ribosomal protein L33-A, putative.	Ribosomal protein L34, putative.	0.999
BN1205_002620	BN1205_069230	B9PR43	B9PN66	60s ribosomal protein L33-A, putative.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
BN1205_002620	BN1205_080490	B9PR43	B9Q1A7	60s ribosomal protein L33-A, putative.	60s ribosomal protein L31, putative.	0.999
BN1205_002620	BN1205_082480	B9PR43	B9PTX0	60s ribosomal protein L33-A, putative.	60S ribosomal protein L10, putative.	0.999
BN1205_002620	BN1205_083290	B9PR43	B9PTQ0	60s ribosomal protein L33-A, putative.	60s ribosomal protein L19, putative.	0.999
BN1205_002620	BN1205_083510	B9PR43	B9PTM6	60s ribosomal protein L33-A, putative.	Ubiquitin / ribosomal protein CEP52 fusion protein, putative.	0.999
BN1205_002620	BN1205_092280	B9PR43	B9PNJ9	60s ribosomal protein L33-A, putative.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
BN1205_002620	BN1205_094570	B9PR43	B9PJR5	60s ribosomal protein L33-A, putative.	Ribosomal protein L22, putative; Belongs to the universal ribosomal protein uL15 family.	0.999
BN1205_002620	BN1205_108820	B9PR43	B6KLD4	60s ribosomal protein L33-A, putative.	Ribosomal protein L32, putative.	0.999
BN1205_002620	TGVEG_229250A	B9PR43	A0A125YHB5	60s ribosomal protein L33-A, putative.	Ribosomal protein RPL28.	0.997
BN1205_002620	TGVEG_229250B	B9PR43	A0A125YZB1	60s ribosomal protein L33-A, putative.	Ribosomal protein RPL28.	0.985