(47 nodes) Mismatch repair network (Bison bison)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	POLD3	DNA polymerase delta 3, accessory subunit. (464 aa)
	ENSBBBP00000026321	annotation not available (79 aa)
	YJU2	YJU2 splicing factor homolog. (317 aa)
	PMS1	PMS1 homolog 1, mismatch repair system component. (932 aa)
	ENSBBBP00000027166	annotation not available (400 aa)
	SASS6	SAS-6 centriolar assembly protein. (657 aa)
	RPA3	Replication protein A3. (121 aa)
	ATAD5	ATPase family AAA domain containing 5. (1801 aa)
	SSBP1	Single stranded DNA binding protein 1. (148 aa)
	ENSBBBP00000021296	annotation not available (287 aa)
	FBH1	F-box DNA helicase 1. (1034 aa)
	ENSBBBP00000019961	annotation not available (270 aa)
	ENSBBBP00000019955	annotation not available (258 aa)
	ENSBBBP00000019590	annotation not available (161 aa)
	ENSBBBP00000019104	annotation not available (252 aa)
	CABP5	Calcium binding protein 5. (173 aa)
	PRKRIP1	PRKR interacting protein 1. (186 aa)
	PMS2	PMS1 homolog 2, mismatch repair system component. (863 aa)
	MSH2	mutS homolog 2. (934 aa)
	MSH6	mutS homolog 6. (1360 aa)
	STN1	STN1 subunit of CST complex. (368 aa)
	RPA1	Replication protein A1. (616 aa)
	ENSBBBP00000014548	annotation not available (261 aa)
	ENSBBBP00000012502	annotation not available (261 aa)
	RFC4	Replication factor C subunit 4. (364 aa)
	MLH1	mutL homolog 1. (758 aa)
	ENSBBBP00000009595	annotation not available (832 aa)
	EXO1	Exonuclease 1. (835 aa)
	POLD2	DNA polymerase delta 2, accessory subunit. (469 aa)
	ENSBBBP00000008568	annotation not available (270 aa)
	ISG20L2	Interferon stimulated exonuclease gene 20 like 2. (350 aa)
	MEIOB	Meiosis specific with OB-fold. (449 aa)
	ISG20	Interferon stimulated exonuclease gene 20. (171 aa)
	AEN	Apoptosis enhancing nuclease. (325 aa)
	ENSBBBP00000007781	annotation not available (105 aa)
	MSH3	mutS homolog 3. (1065 aa)
	ENSBBBP00000006555	annotation not available (129 aa)
	RFC5	Replication factor C subunit 5. (339 aa)
	MLH3	mutL homolog 3. (1439 aa)
	RFC2	Replication factor C subunit 2. (352 aa)
	RAD17	RAD17 checkpoint clamp loader component. (682 aa)
	ENSBBBP00000003537	annotation not available (270 aa)
	RFC3	Replication factor C subunit 3. (356 aa)
	MSH4	mutS homolog 4. (934 aa)
	GTF3C6	General transcription factor IIIC subunit 6. (225 aa)
	LIG1	DNA ligase 1. (886 aa)
	ENSBBBP00000002130	annotation not available (107 aa)

Your Current Organism:

Bison bison

NCBI taxonomy Id: 43346
Other names: B. bison bison, Bison bison bison, Bos bison bison

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AEN	ENSBBBP00000012502	ENSBBBP00000008029	ENSBBBP00000012502	Apoptosis enhancing nuclease.	annotation not available	0.620
AEN	ENSBBBP00000014548	ENSBBBP00000008029	ENSBBBP00000014548	Apoptosis enhancing nuclease.	annotation not available	0.620
AEN	FBH1	ENSBBBP00000008029	ENSBBBP00000021092	Apoptosis enhancing nuclease.	F-box DNA helicase 1.	0.527
ATAD5	ENSBBBP00000003537	ENSBBBP00000022573	ENSBBBP00000003537	ATPase family AAA domain containing 5.	annotation not available	0.417
ATAD5	ENSBBBP00000008568	ENSBBBP00000022573	ENSBBBP00000008568	ATPase family AAA domain containing 5.	annotation not available	0.417
ATAD5	ENSBBBP00000012502	ENSBBBP00000022573	ENSBBBP00000012502	ATPase family AAA domain containing 5.	annotation not available	0.914
ATAD5	ENSBBBP00000014548	ENSBBBP00000022573	ENSBBBP00000014548	ATPase family AAA domain containing 5.	annotation not available	0.914
ATAD5	ENSBBBP00000019104	ENSBBBP00000022573	ENSBBBP00000019104	ATPase family AAA domain containing 5.	annotation not available	0.417
ATAD5	ENSBBBP00000019955	ENSBBBP00000022573	ENSBBBP00000019955	ATPase family AAA domain containing 5.	annotation not available	0.417
ATAD5	ENSBBBP00000019961	ENSBBBP00000022573	ENSBBBP00000019961	ATPase family AAA domain containing 5.	annotation not available	0.417
ATAD5	EXO1	ENSBBBP00000022573	ENSBBBP00000008893	ATPase family AAA domain containing 5.	Exonuclease 1.	0.908
ATAD5	FBH1	ENSBBBP00000022573	ENSBBBP00000021092	ATPase family AAA domain containing 5.	F-box DNA helicase 1.	0.552
ATAD5	LIG1	ENSBBBP00000022573	ENSBBBP00000002237	ATPase family AAA domain containing 5.	DNA ligase 1.	0.751
ATAD5	MEIOB	ENSBBBP00000022573	ENSBBBP00000008257	ATPase family AAA domain containing 5.	Meiosis specific with OB-fold.	0.651
ATAD5	POLD2	ENSBBBP00000022573	ENSBBBP00000008779	ATPase family AAA domain containing 5.	DNA polymerase delta 2, accessory subunit.	0.578
ATAD5	RAD17	ENSBBBP00000022573	ENSBBBP00000004356	ATPase family AAA domain containing 5.	RAD17 checkpoint clamp loader component.	0.886
ATAD5	RFC2	ENSBBBP00000022573	ENSBBBP00000005362	ATPase family AAA domain containing 5.	Replication factor C subunit 2.	0.966
ATAD5	RFC3	ENSBBBP00000022573	ENSBBBP00000002932	ATPase family AAA domain containing 5.	Replication factor C subunit 3.	0.978
ATAD5	RFC4	ENSBBBP00000022573	ENSBBBP00000012492	ATPase family AAA domain containing 5.	Replication factor C subunit 4.	0.982
ATAD5	RFC5	ENSBBBP00000022573	ENSBBBP00000005678	ATPase family AAA domain containing 5.	Replication factor C subunit 5.	0.968