23 items (Ostreococcus lucimarinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OSTLU_28677	Uncharacterized protein. (722 aa)
	OSTLU_44504	Aspartokinase; Belongs to the aspartokinase family. (463 aa)
	OSTLU_28856	Semialdhyde_dh domain-containing protein. (383 aa)
	OSTLU_29150	Pyruvate carboxyltransferase domain-containing protein. (624 aa)
	OSTLU_29911	M20_dimer domain-containing protein. (445 aa)
	OSTLU_30575	Uncharacterized protein; Belongs to the ketol-acid reductoisomerase family. (546 aa)
	OSTLU_30612	Aminotran_1_2 domain-containing protein. (473 aa)
	OSTLU_34354	Uncharacterized protein. (567 aa)
	OSTLU_31397	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (336 aa)
	OSTLU_31597	Aspartate aminotransferase. (399 aa)
	OSTLU_24535	Citrate synthase; Belongs to the citrate synthase family. (399 aa)
	OSTLU_33086	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (362 aa)
	OSTLU_33128	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family. (461 aa)
	OSTLU_1828	N-acetyltransferase domain-containing protein. (506 aa)
	OSTLU_44053	Uncharacterized protein. (463 aa)
	OSTLU_47417	Iso_dh domain-containing protein. (397 aa)
	OSTLU_51596	Acetolactate synthase. (610 aa)
	OSTLU_37633	Citrate synthase; Belongs to the citrate synthase family. (544 aa)
	OSTLU_89681	Carrier domain-containing protein. (652 aa)
	OSTLU_43628	Semialdhyde_dh domain-containing protein. (313 aa)
	OSTLU_52011	AA_kinase domain-containing protein. (334 aa)
	OSTLU_29616	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. (361 aa)
	OSTLU_19153	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (384 aa)

Your Current Organism:

Ostreococcus lucimarinus

NCBI taxonomy Id: 436017
Other names: O. lucimarinus CCE9901, Ostreococcus lucimarinus CCE9901

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OSTLU_1828	OSTLU_19153	A4S1N7	A4SBI5	N-acetyltransferase domain-containing protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.660
OSTLU_1828	OSTLU_29616	A4S1N7	A4SBH9	N-acetyltransferase domain-containing protein.	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.	0.456
OSTLU_1828	OSTLU_29911	A4S1N7	A4RTE3	N-acetyltransferase domain-containing protein.	M20_dimer domain-containing protein.	0.456
OSTLU_1828	OSTLU_30612	A4S1N7	A4RUG5	N-acetyltransferase domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.905
OSTLU_1828	OSTLU_31597	A4S1N7	A4RX79	N-acetyltransferase domain-containing protein.	Aspartate aminotransferase.	0.922
OSTLU_1828	OSTLU_33128	A4S1N7	A4S1K1	N-acetyltransferase domain-containing protein.	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	0.989
OSTLU_1828	OSTLU_43628	A4S1N7	A4SB50	N-acetyltransferase domain-containing protein.	Semialdhyde_dh domain-containing protein.	0.898
OSTLU_1828	OSTLU_44504	A4S1N7	A4RQT3	N-acetyltransferase domain-containing protein.	Aspartokinase; Belongs to the aspartokinase family.	0.454
OSTLU_1828	OSTLU_52011	A4S1N7	A4SBC5	N-acetyltransferase domain-containing protein.	AA_kinase domain-containing protein.	0.906
OSTLU_19153	OSTLU_1828	A4SBI5	A4S1N7	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	N-acetyltransferase domain-containing protein.	0.660
OSTLU_19153	OSTLU_29616	A4SBI5	A4SBH9	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.	0.407
OSTLU_19153	OSTLU_29911	A4SBI5	A4RTE3	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	M20_dimer domain-containing protein.	0.950
OSTLU_19153	OSTLU_33128	A4SBI5	A4S1K1	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	0.985
OSTLU_19153	OSTLU_43628	A4SBI5	A4SB50	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Semialdhyde_dh domain-containing protein.	0.983
OSTLU_19153	OSTLU_52011	A4SBI5	A4SBC5	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	AA_kinase domain-containing protein.	0.824
OSTLU_24535	OSTLU_29150	A4RXC3	A4RRV6	Citrate synthase; Belongs to the citrate synthase family.	Pyruvate carboxyltransferase domain-containing protein.	0.482
OSTLU_24535	OSTLU_29616	A4RXC3	A4SBH9	Citrate synthase; Belongs to the citrate synthase family.	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.	0.675
OSTLU_24535	OSTLU_31597	A4RXC3	A4RX79	Citrate synthase; Belongs to the citrate synthase family.	Aspartate aminotransferase.	0.913
OSTLU_24535	OSTLU_34354	A4RXC3	A4RUR5	Citrate synthase; Belongs to the citrate synthase family.	Uncharacterized protein.	0.412
OSTLU_24535	OSTLU_37633	A4RXC3	A4S9E5	Citrate synthase; Belongs to the citrate synthase family.	Citrate synthase; Belongs to the citrate synthase family.	0.902